View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21614_low_32 (Length: 288)

Name: NF21614_low_32
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21614_low_32
NF21614_low_32
[»] chr4 (17 HSPs)
chr4 (17-273)||(253636-253896)
chr4 (108-236)||(5856260-5856388)
chr4 (108-233)||(5562915-5563040)
chr4 (108-233)||(5888146-5888271)
chr4 (108-234)||(5611731-5611857)
chr4 (108-233)||(5897009-5897134)
chr4 (166-249)||(5603671-5603754)
chr4 (110-232)||(5891158-5891279)
chr4 (108-233)||(5551362-5551487)
chr4 (108-232)||(5849936-5850060)
chr4 (182-264)||(5557204-5557286)
chr4 (163-233)||(5854911-5854981)
chr4 (167-230)||(5423075-5423138)
chr4 (167-230)||(5467378-5467441)
chr4 (119-238)||(5573064-5573183)
chr4 (119-238)||(5585271-5585390)
chr4 (170-228)||(3747174-3747232)
[»] chr8 (1 HSPs)
chr8 (185-257)||(1481432-1481504)
[»] chr5 (1 HSPs)
chr5 (167-230)||(20329764-20329827)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 253896 - 253636
Alignment:
Q  17 cactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaatttttgtcta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253896 cactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaatttttgtcta 253797  T
Q  117 ggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaatt 216  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253796 ggagttgccgataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaatt 253697  T
Q  217 ccaatcaattgaacaag----atagccctctacatgctggttgtgaatgcaatctctgctc 273  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  253696 ccaatcaattgaacaagatatatagccctctacatgctggttgtgaatgcaatctctgctc 253636  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 5856260 - 5856388
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||| | ||||| |||||||| ||| |||||||| ||| |||| || | || |||||| | | ||||||||||||||| |||||| ||||||| |||    
T  5856260 ttttgtccatgagtttccaataacctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacact 5856359  T
Q  208 taaaaaattccaatcaattgaacaagata 236  Q
    ||||||||||||||||||| |||||||||    
T  5856360 taaaaaattccaatcaattaaacaagata 5856388  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 5562915 - 5563040
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  ||||| ||||||||||||||||| | ||||| |||    
T  5562915 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacact 5563014  T
Q  208 taaaaaattccaatcaattgaacaag 233  Q
    |||||||||||| |||||||||||||    
T  5563015 taaaaaattccagtcaattgaacaag 5563040  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 5888271 - 5888146
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5888271 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5888172  T
Q  208 taaaaaattccaatcaattgaacaag 233  Q
    |||||||||||| |||||||||||||    
T  5888171 taaaaaattccattcaattgaacaag 5888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 5611731 - 5611857
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| | ||| | ||| ||||  ||||| ||||||||||||||||| |  |||| |||    
T  5611731 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacact 5611830  T
Q  208 taaaaaattccaatcaattgaacaaga 234  Q
    |||||||||||| ||||||||| ||||    
T  5611831 taaaaaattccagtcaattgaagaaga 5611857  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 5897134 - 5897009
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5897134 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5897035  T
Q  208 taaaaaattccaatcaattgaacaag 233  Q
    |||||||||||  |||||||||||||    
T  5897034 taaaaaattccgttcaattgaacaag 5897009  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 5603671 - 5603754
Alignment:
Q  166 aatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgc 249  Q
    ||||| |||||||||||||||||  ||||| | ||||| ||||| ||||||||| ||||||||||||| ||||| |||||||||    
T  5603671 aatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgc 5603754  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 5891279 - 5891158
Alignment:
Q  110 ttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatactta 209  Q
    ||||||| ||||| |||||||||||| |||||||  ||| |||  | | |||| |||||||  ||||| | ||||||||||||||| |  |||| |||||    
T  5891279 ttgtctacgagtttccaataacttactctccatttcttccaaacaagagggga-ccaatgatgattccgaacccaaaaacaaatcccaactccacactta 5891181  T
Q  210 aaaaattccaatcaattgaacaa 232  Q
    |||||||||||||||||||||||    
T  5891180 aaaaattccaatcaattgaacaa 5891158  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 5551362 - 5551487
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||  ||||| |||||| ||||| |||||||  ||| |||| |  |||| ||  ||||  ||||||||||||||||||||||| |  |||| |||    
T  5551362 ttttgtctgcgagtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacact 5551461  T
Q  208 taaaaaattccaatcaattgaacaag 233  Q
    |||||||||||| |||||||||||||    
T  5551462 taaaaaattccagtcaattgaacaag 5551487  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 5850060 - 5849936
Alignment:
Q  108 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 207  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| |   |||| |||||| ||||||||||||||||| |  |||| |||    
T  5850060 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacact 5849961  T
Q  208 taaaaaattccaatcaattgaacaa 232  Q
    |||||||||||| ||||| ||||||    
T  5849960 taaaaaattccagtcaatcgaacaa 5849936  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 5557204 - 5557286
Alignment:
Q  182 ccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaa 264  Q
    ||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||  |||| || |||||||||||||| ||||||    
T  5557204 ccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtggatgcaa 5557286  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 5854981 - 5854911
Alignment:
Q  163 accaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag 233  Q
    ||||||||  ||||| ||||||||||||||||| |  |||||||| ||||||||||| |||||||||||||    
T  5854981 accaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaag 5854911  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 5423075 - 5423138
Alignment:
Q  167 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 230  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  5423075 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5423138  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 5467378 - 5467441
Alignment:
Q  167 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 230  Q
    |||||||||||||| ||||||| | |||| |  ||||||||||| ||| |||||||||||||||    
T  5467378 atgaaaattccaaggccaaaaatacatcccaactccatacttaagaaactccaatcaattgaac 5467441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 5573183 - 5573064
Alignment:
Q  119 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 218  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5573183 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5573084  T
Q  219 aatcaattgaacaagatagc 238  Q
    | ||  ||||||||||||||    
T  5573083 agtctgttgaacaagatagc 5573064  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 5585390 - 5585271
Alignment:
Q  119 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 218  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5585390 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5585291  T
Q  219 aatcaattgaacaagatagc 238  Q
    | ||  ||||||||||||||    
T  5585290 agtctgttgaacaagatagc 5585271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 3747174 - 3747232
Alignment:
Q  170 aaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattga 228  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||| |||||| ||| ||||    
T  3747174 aaaatcccaagcccgaaaacaaatccaaattccacacttaaaatattccagtcacttga 3747232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 1481432 - 1481504
Alignment:
Q  185 aaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtg 257  Q
    |||| |||||| | ||||| ||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  1481432 aaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtg 1481504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 20329827 - 20329764
Alignment:
Q  167 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 230  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  20329827 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 20329764  T

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