View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_low_35 (Length: 275)
Name: NF21614_low_35
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33205020 - 33204780
Alignment:
| Q |
1 |
aagttatagaaccatttattttcccaaacaattaaacatcaaattaccaacggggtcaattagattacagatattgagctatttaatctctcacttttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33205020 |
aagttatagaaccatttattttcccaaacaattaaacatcaaaataccaacggggtcaattagattacagatattgagctatttaatctctcacttttac |
33204921 |
T |
|
| Q |
101 |
agcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacacaaaaacaaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33204920 |
agcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacacaaaaacaaaatga |
33204821 |
T |
|
| Q |
201 |
tctggaaaaaatacaagcctttgtatttctcatttcccagc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33204820 |
tctggaaaaaatacaagcctttgtatttctcatttcccagc |
33204780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University