View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_4 (Length: 626)
Name: NF21614_low_4
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 34703553 - 34703447
Alignment:
| Q |
166 |
ctctattgaagatgaatgattgaatgacagaataatatatnnnnnnnnnnntcctcaatttattttatagctataaaaaatattgatcggacacgggatg |
265 |
Q |
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| T |
34703553 |
ctctattgaagatgaatgattgaatgacagaataatatataaaaaaaaa--tcctcaatttattttatagctataaaaaatattgatcggacacgggatg |
34703456 |
T |
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| Q |
266 |
cattaagaa |
274 |
Q |
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| T |
34703455 |
cattaagaa |
34703447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 34703718 - 34703633
Alignment:
| Q |
16 |
ataagcttttaatttttggtgaaataataatgagactggttccagcagtatattcg----tatgggcagtatgacttaggatgggc |
97 |
Q |
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| T |
34703718 |
ataagcttttaatttttggtgaaataataatgagactggtgccagcagtatattcgtatatatgggcagtatgacttaggatgggc |
34703633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 34703315 - 34703225
Alignment:
| Q |
406 |
gcttcatttcttgattaatcactaagaaaattatcaggacaaaatacacnnnnnnnnnnaataatttaaagcatcagtcaaattcggaaagg |
497 |
Q |
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| T |
34703315 |
gcttcatttcttgattaatcactaagaaaattatcaggacaaaatacac-tttttttttaataatttaaagtatcagtcaaattcggaaagg |
34703225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 34703184 - 34703119
Alignment:
| Q |
519 |
aaaaatggccagtaataatgnnnnnnntgaagccccagaatttgctttcttctctacaactcaaaa |
584 |
Q |
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| T |
34703184 |
aaaaatggccagcaataatgaaaaaaatgaagccccagagtttgctttcttctctacaacgcaaaa |
34703119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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