View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_40 (Length: 249)
Name: NF21614_low_40
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 5775817 - 5775623
Alignment:
| Q |
45 |
gactcgcttcctaatgcaattgtcgatgcatatgattctggaattaatactgctcggcagaaggttgtgtcaacgccactacgaagatgagtatcttact |
144 |
Q |
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| T |
5775817 |
gactcgcttcctaatgcaattgtcgatgcatatgattttggaattaatactgctcggaagaaggttgtgtcaacgccactacgaagatgagtatcttact |
5775718 |
T |
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| Q |
145 |
catctgatagactcgatgatccactatgggataaggtggttttaaaaacgcacctcgtgtcacctctccggtgtgcacctcgtgactcctctctg |
239 |
Q |
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| T |
5775717 |
catatgttagactcgatgatccactatgggataaggtggttttaaaaacgcacctcgtataacctctccggtgtgcatctcgtaactcctctctg |
5775623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 5792597 - 5792499
Alignment:
| Q |
45 |
gactcgcttcctaatgcaattgtcgatgcatatgattctggaattaatactgctcggcagaaggttgtgtcaacgccactacgaagatgagtatcttac |
143 |
Q |
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| T |
5792597 |
gactcgcttcctaatgcaattgtcgatgcatatgattctggaattaatactgctcggcagaagcttgtgtcaacgccactacgaagatgagtatcttac |
5792499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 32008000 - 32008075
Alignment:
| Q |
65 |
tgtcgatgcatatgattctggaattaatactgctcggcagaaggttgtgtcaacgccactacgaagatgagtatct |
140 |
Q |
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| T |
32008000 |
tgtcgatgcatataattccggaattaataccgctccgtagagggttgtggcaacgccactaaggagatgagtatct |
32008075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 32008078 - 32008112
Alignment:
| Q |
204 |
tcacctctccggtgtgcacctcgtgactcctctct |
238 |
Q |
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| T |
32008078 |
tcacctctccggtttgcacctcgtgactcctctct |
32008112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 4023757 - 4023724
Alignment:
| Q |
205 |
cacctctccggtgtgcacctcgtgactcctctct |
238 |
Q |
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| T |
4023757 |
cacctctccggtgtgcacctcgtgactcctctct |
4023724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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