View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21614_low_48 (Length: 218)
Name: NF21614_low_48
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 34697369 - 34697181
Alignment:
| Q |
13 |
aacctgtgaaacacacatacaacaatttatgagtcatatgcaactcgaaaacacaaacatcaaccaaatgaagccatgaacattgcacacgtccatgaga |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34697369 |
aacctgagaaacacacatacaacaatttatgagtcatatgcaactcgaaagcacaaacatcaaccaaatgaagccatgaacattgcacacgtccatgaga |
34697270 |
T |
|
| Q |
113 |
tattatagaacataaccataccccgtgc-gtacattctgggtgtgcgcacacgcgcccacacaaacacatgtaaatattgatatatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34697269 |
tattatagaacataaccataccccgtgctttaaattctgggtgtgcgcacgggcgcccacacaaacacatgtaaatattgatatatatt |
34697181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 8285621 - 8285537
Alignment:
| Q |
21 |
aaacacacatacaacaatttatgagtcatatgcaactcgaaaacacaaacatcaaccaaatgaagccatgaacattgcacacgtc |
105 |
Q |
| |
|
||||||||| | ||||||| || |||||||||||| | |||||||||| ||||| ||||||| |||| |||||||||||||| |
|
|
| T |
8285621 |
aaacacacaaataacaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaaatcatgcacattgcacacgtc |
8285537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University