View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21614_low_50 (Length: 202)
Name: NF21614_low_50
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21614_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 2563661 - 2563552
Alignment:
| Q |
77 |
cacagattttgaatgtcttaatagcttcaacgaatatttggtatcttttttcttaaagacaattgaagcagctgaaagtgcagcagcagcctcagctgca |
176 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563661 |
cacagattttgaatgtcttaatagcttcgacgaatatttggtatcttttttcttaaagacaattgaagcagctgaaagtgcagcagcagcctcagctgca |
2563562 |
T |
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| Q |
177 |
gcctcagttc |
186 |
Q |
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| T |
2563561 |
gcctcagttc |
2563552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2563708 - 2563788
Alignment:
| Q |
1 |
caaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacag |
81 |
Q |
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| T |
2563708 |
caaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacag |
2563788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 2573433 - 2573325
Alignment:
| Q |
78 |
acagattttgaatgtcttaatagcttcaacgaatatttggtatcttttttcttaaagacaattgaagcagctgaaagtgcagcagcagcctcagctgcag |
177 |
Q |
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||||||||||| || ||||||||||| | ||||| ||| ||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
2573433 |
acagattttgactggcttaatagcttggatgaataattgatatctgttttcttaaagacaattgaagcagcagaaagagcggcagcagcctcagctgcag |
2573334 |
T |
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| Q |
178 |
cctcagttc |
186 |
Q |
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| T |
2573333 |
cctcagttc |
2573325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 2573586 - 2573628
Alignment:
| Q |
30 |
tatgttttgtagttgtttgattttgctgacaagtatagaggca |
72 |
Q |
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| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggca |
2573628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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