View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21614_low_8 (Length: 548)

Name: NF21614_low_8
Description: NF21614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21614_low_8
NF21614_low_8
[»] chr5 (5 HSPs)
chr5 (1-381)||(39674782-39675162)
chr5 (452-494)||(39674669-39674711)
chr5 (97-157)||(15210794-15210854)
chr5 (96-180)||(18175207-18175291)
chr5 (96-128)||(31802255-31802287)
[»] chr1 (4 HSPs)
chr1 (318-531)||(51044747-51044959)
chr1 (102-155)||(4865830-4865883)
chr1 (107-141)||(40800284-40800318)
chr1 (96-141)||(48607771-48607816)
[»] chr3 (1 HSPs)
chr3 (318-447)||(34626305-34626433)
[»] chr2 (2 HSPs)
chr2 (97-176)||(5164813-5164892)
chr2 (96-188)||(23405199-23405291)
[»] chr8 (2 HSPs)
chr8 (95-154)||(32648313-32648372)
chr8 (95-136)||(4230554-4230595)
[»] chr6 (3 HSPs)
chr6 (123-185)||(3037595-3037658)
chr6 (96-154)||(33697122-33697180)
chr6 (95-135)||(28957108-28957148)
[»] chr4 (3 HSPs)
chr4 (101-139)||(32866976-32867014)
chr4 (93-138)||(49233814-49233859)
chr4 (96-141)||(50376671-50376716)
[»] chr7 (4 HSPs)
chr7 (95-183)||(1798143-1798229)
chr7 (96-136)||(3948054-3948094)
chr7 (95-147)||(18677026-18677078)
chr7 (94-138)||(35644436-35644480)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 39675162 - 39674782
Alignment:
Q  1 aaatatttaactacacagtctattagcgtgagtttttcattcgaaattgtacaacacattgtatccatttttaaataagctcacacactaaaattgtgag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  39675162 aaatatttaactacacggtctattagcgtgagtttttcattcgaaattgtacaacacattgtatctatttttaaataagttcacacactaaaattgtgag 39675063  T
Q  101 tttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcatcttaaaaaggttaagttatttga 200  Q
    ||||||||| ||| | |||||||||||||||||||||| | |  |  |||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39675062 tttaactcaattggttgagacgttgcattatatatgtaagaactgaggttcgaactccagataactcacttattcatcttaaaaatgttaagttatttga 39674963  T
Q  201 aaggnnnnnnngggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggatgatacaattactgagttggaggg 300  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39674962 aaggaaaaaaagggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggatgatacaattacttagttggaggg 39674863  T
Q  301 atcggctgcaaccaagtaactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttct 381  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  39674862 atcggctgcaaccaagtaagtaatgaaacaagggattgatccagctacacataaacccttcctcaataatgaatctcttct 39674782  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 39674711 - 39674669
Alignment:
Q  452 aatgctagaatcctcacatgaatattcagaagcacttctaatg 494  Q
    |||| ||||||||||||| |||||||||||||||||| |||||    
T  39674711 aatgttagaatcctcacaggaatattcagaagcacttttaatg 39674669  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 15210794 - 15210854
Alignment:
Q  97 tgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactc 157  Q
    |||||||||||||||||||||  |||||||||  | |||| ||||||||| ||| ||||||    
T  15210794 tgagtttaactcagttgataggaacgttgcatattctatgcagggatcggggtttgaactc 15210854  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 18175207 - 18175291
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcatctt 180  Q
    ||||| ||||||| ||||  || ||||||||||  ||||||||||| |||| |||||||| | ||| | | ||||||||||||||    
T  18175207 gtgagcttaactcggttgtcagggacgttgcatattatatgtaggggtcggggttcgaaccccagacatcccacttattcatctt 18175291  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 31802287 - 31802255
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcat 128  Q
    ||||||||||||||||||||||||||| |||||    
T  31802287 gtgagtttaactcagttgatagagacgatgcat 31802255  T

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Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 318 - 531
Target Start/End: Original strand, 51044747 - 51044959
Alignment:
Q  318 aactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttcttgtaaaggaagagaaggagaaaccatcaatgataat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51044747 aactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttcttgtaaaggaagagaaggaaaaaccatcaatgataat 51044846  T
Q  418 gtcaaatgtctcaacctcaacctcaaagaactttaatgctagaatcctcacatgaatattcagaagcacttctaatgaataagccaacatttgatcttga 517  Q
    | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51044847 gccac-tgtctcaacctcaacctcaaagaactttaatgctagaatcctcacatgaatattcagaagcacttctaatgaataagccaacatttgatcttga 51044945  T
Q  518 tccattgcaattac 531  Q
    ||||||||||||||    
T  51044946 tccattgcaattac 51044959  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 4865883 - 4865830
Alignment:
Q  102 ttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaac 155  Q
    |||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||    
T  4865883 ttaactcagttggtagggacattgcataatatatgtaggggtcggagttcgaac 4865830  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 40800318 - 40800284
Alignment:
Q  107 tcagttgatagagacgttgcattatatatgtaggg 141  Q
    ||||||||||||||| |||||||||||||||||||    
T  40800318 tcagttgatagagacattgcattatatatgtaggg 40800284  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 48607816 - 48607771
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 141  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||||    
T  48607816 gtgagtttaactcagttgatagggatattgcattttatatgtaggg 48607771  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 318 - 447
Target Start/End: Complemental strand, 34626433 - 34626305
Alignment:
Q  318 aactaatgaaacaagggattgatccagctacacataaacccttgatcaataa---tgaatctcttcttgtaaaggaagagaaggagaaaccatcaatgat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||   |||| |||||||||||||||| ||||||||||||||    
T  34626433 aactaatgaaacaagggattgatccagctacacataaacccttcatcaataatattgaatc---tcttataaaggaagagaaggaaaaaccatcaatgat 34626337  T
Q  415 aatgtcaaatgtctcaacctcaacctcaaagaa 447  Q
    |||| | | |||||||  |||||||||||||||    
T  34626336 aatg-ccactgtctcactctcaacctcaaagaa 34626305  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 5164813 - 5164892
Alignment:
Q  97 tgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattca 176  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||   ||| | ||||||||||||    
T  5164813 tgagtttaacttagttgatagagatattgcattatatatgtaggggtcggaattcgaaccttagacatctcacttattca 5164892  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 23405199 - 23405291
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcatcttaaaaaggt 188  Q
    ||||| ||| |||||||| ||| ||| |||||| ||||||| |||| |||| |||||||| |  || | | |||||||||| |||||||||||    
T  23405199 gtgagcttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccacttattcaccttaaaaaggt 23405291  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 32648372 - 32648313
Alignment:
Q  95 tgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 154  Q
    ||||||||||||||| ||| | ||||||||| || |||||||||| |||||| |||||||    
T  32648372 tgtgagtttaactcaattgtttgagacgttgtataatatatgtagagatcggggttcgaa 32648313  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 4230554 - 4230595
Alignment:
Q  95 tgtgagtttaactcagttgatagagacgttgcattatatatg 136  Q
    |||||||||||||| ||||||| |||| ||||||||||||||    
T  4230554 tgtgagtttaactctgttgataaagacattgcattatatatg 4230595  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 3037658 - 3037595
Alignment:
Q  123 ttgcattat-atatgtagggatcggagttcgaactcaagataactcacttattcatcttaaaaa 185  Q
    ||||||||| ||||||||||| ||| |||||||||  ||| ||| |||||||||||||||||||    
T  3037658 ttgcattatgatatgtagggagcggtgttcgaacttcagacaacccacttattcatcttaaaaa 3037595  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 33697180 - 33697122
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 154  Q
    ||||| |||||||||||||||| ||  ||||||| |||||| |||| ||||||||||||    
T  33697180 gtgagcttaactcagttgatagggatattgcattttatatgcaggggtcggagttcgaa 33697122  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 28957108 - 28957148
Alignment:
Q  95 tgtgagtttaactcagttgatagagacgttgcattatatat 135  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  28957108 tgtgagtttaactcagttgataaagacattgcataatatat 28957148  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 32866976 - 32867014
Alignment:
Q  101 tttaactcagttgatagagacgttgcattatatatgtag 139  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  32866976 tttaactcaattgatagagacgttgcataatatatgtag 32867014  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 49233859 - 49233814
Alignment:
Q  93 attgtgagtttaactcagttgatagagacgttgcattatatatgta 138  Q
    ||||| |||||||||||||||||||||||  ||||| |||||||||    
T  49233859 attgtaagtttaactcagttgatagagacaatgcataatatatgta 49233814  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 50376716 - 50376671
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 141  Q
    |||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggg 50376671  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 1798143 - 1798229
Alignment:
Q  95 tgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcatcttaaa 183  Q
    ||||||| |||||||  | |||||||| ||| |||||||||||| || |||||||||||| ||  |||  |||||||||||||||||||    
T  1798143 tgtgagtataactcaactaatagagacattgtattatatatgtaagg-tcggagttcgaa-tcctgattcctcacttattcatcttaaa 1798229  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 3948054 - 3948094
Alignment:
Q  96 gtgagtttaactcagttgatagagacgttgcattatatatg 136  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  3948054 gtgagtttaactcagttgatagagacaatgcataatatatg 3948094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 18677026 - 18677078
Alignment:
Q  95 tgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcgga 147  Q
    ||||||||||||||||||| ||  ||||||||||  |||||| ||||||||||    
T  18677026 tgtgagtttaactcagttggtatggacgttgcatattatatgcagggatcgga 18677078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 35644436 - 35644480
Alignment:
Q  94 ttgtgagtttaactcagttgatagagacgttgcattatatatgta 138  Q
    |||||||||||||||||||| |||| || || |||||||||||||    
T  35644436 ttgtgagtttaactcagttgttagaaacattacattatatatgta 35644480  T

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