View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_high_10 (Length: 417)
Name: NF21615_high_10
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_10 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 19292738 - 19292324
Alignment:
| Q |
1 |
ttgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcacaaatgtaagatttagtga |
96 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | || |
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| T |
19292738 |
ttgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcacaaatgtaagattttgcga |
19292639 |
T |
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| Q |
97 |
tgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaatatatagcct |
196 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19292638 |
tgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaata----gcct |
19292543 |
T |
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| Q |
197 |
aaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaagccaaacaaaa |
296 |
Q |
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| T |
19292542 |
aaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaagccaaacaaaa |
19292445 |
T |
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| Q |
297 |
atctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataat |
396 |
Q |
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| T |
19292444 |
atctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataat |
19292345 |
T |
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| Q |
397 |
attgaaagcttcactaaactc |
417 |
Q |
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| T |
19292344 |
attgaaagcttcactaaactc |
19292324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
335 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
385 |
Q |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
333 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
410 |
Q |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
333 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
410 |
Q |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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