View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_high_15 (Length: 352)

Name: NF21615_high_15
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_high_15
NF21615_high_15
[»] chr2 (4 HSPs)
chr2 (151-227)||(21354375-21354451)
chr2 (150-227)||(29329-29406)
chr2 (150-227)||(21365499-21365576)
chr2 (150-227)||(21351720-21351797)
[»] chr5 (1 HSPs)
chr5 (166-227)||(15298698-15298759)
[»] chr3 (1 HSPs)
chr3 (53-81)||(45745774-45745802)
[»] chr1 (1 HSPs)
chr1 (52-80)||(50665337-50665365)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 21354375 - 21354451
Alignment:
Q  151 tcatttcgtgctacttggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21354375 tcatttcgtgctacttggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 21354451  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 29406 - 29329
Alignment:
Q  150 ttcatttcgtgctacttggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 227  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29406 ttcatttcgagctacttggtcttccatccatatgcttctgcccttaaaattttcatctttatgcttgtgtgtcttatg 29329  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 21365576 - 21365499
Alignment:
Q  150 ttcatttcgtgctacttggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 227  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21365576 ttcatttcgagctacttggtcttccatccatatgcttctgcctttaaaattttaatctttatgcttgtgtgttttatg 21365499  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 21351797 - 21351720
Alignment:
Q  150 ttcatttcgtgctacttggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 227  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  21351797 ttcatttcgagctacttggtcttccatccatacgcttctgcccttaaaattttaatcttaatgcttgcgtgtcttatg 21351720  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 15298759 - 15298698
Alignment:
Q  166 tggtcttccatccatatgcttctgcccttaaaattttaatctttatgcttgtgtgtcttatg 227  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  15298759 tggtcttccatctgtatgcttctgcccttaaaattttcatctttatgttcgtgtgtcttatg 15298698  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 45745802 - 45745774
Alignment:
Q  53 cttataatttgggacggagggagtattgt 81  Q
    |||||||||||||||||||||||||||||    
T  45745802 cttataatttgggacggagggagtattgt 45745774  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 50665337 - 50665365
Alignment:
Q  52 gcttataatttgggacggagggagtattg 80  Q
    |||||||||||||||||||||||||||||    
T  50665337 gcttataatttgggacggagggagtattg 50665365  T

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