View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21615_high_16 (Length: 324)
Name: NF21615_high_16
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 46231297 - 46231613
Alignment:
| Q |
1 |
gattcaagatctagttggtaatataaatgaagcatcggggaagatatcacaaacacttcttattgaatctctccaagaggataaaatcatttggaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
46231297 |
gattcaagatctagttggtaatataaatgaagcatcggggaagatatcacaaacacctcttattgaatctatccaagaggataaaatcaattggaaatat |
46231396 |
T |
|
| Q |
101 |
gagaagaatggtcactatttggtaaagagtgtgtaccgatttt-ttatagacgagactctggatacaagtccttttcaagtagatggaaattggaatctc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46231397 |
gagaagaatggtcactatttggtaaagagtgtgtaccgatttttttatagacgagactctggatacaagtccttttcaagtagatggaaattggaatctc |
46231496 |
T |
|
| Q |
200 |
atttggcgcgccaaaagttaatcatttccgatgacgtatttgtagaaattgtttacctactcgaatccgactccaaaaccgtggagtgatcattgtccta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46231497 |
atttggcgcgccaaaagttaatcatttccgatgacgtatttgtagaaattgtttacctactcgaatccgactccaaaaccgtggagtgatcattgtccta |
46231596 |
T |
|
| Q |
300 |
atagttgcgccctatgc |
316 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
46231597 |
atagttgcgctctatgc |
46231613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University