View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21615_high_2 (Length: 605)
Name: NF21615_high_2
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 43563781 - 43563159
Alignment:
| Q |
1 |
attaatacccccaattatagtccacatttttatatgtcgcgtcttggccaattggatagagatagcttctaaacaatccatggcaagagctacacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43563781 |
attaatacccccaattatagtccacatttttatatgtcgcgtcttggccaattggatagagatagcttctaaacaatccatggcaagagctacacatgtt |
43563682 |
T |
|
| Q |
101 |
ttgggcttttgtctaagcacatgcacgcaaagctgaagtatcctatgagatttaaattttaatcactgctgtttaacccttggaataataagtcgatcgg |
200 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43563681 |
ctgggcttttgtctcagcacatgcacacaaagctaaagtatcctatgagatttaaattttaatcactgctgtttaacccttggaatgaaaagtcgatcgg |
43563582 |
T |
|
| Q |
201 |
aagatagaatccgataaattttagtaaaagaagaaattgatcgaaagatatatgttccgttatgtttgtaccgtcaaaatataaatg------------- |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43563581 |
aagatagaatccgataaattttagtaaaagaagaaattgatcgaaag--atatgttccgttgagtttgtaccgtcaaaatataaatgagggggcttcgag |
43563484 |
T |
|
| Q |
288 |
-------agagggccatcgagctccactctagagattttcttgttctaggcaaaactcataagagttgaataagatgtatcttaaaaagatttaatctta |
380 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
43563483 |
taaaaatagggggctatcgagctctactctagagattttcttgttctaggcaaaactcataagagttgaatgagatatatcttaaaaagatttaatctta |
43563384 |
T |
|
| Q |
381 |
cgtgttttcttaccgtcacttcatgattggacatcttaccataaaaatcaaaagctactatttatagtttcaatttcaacgtgatgttttgccgtgattt |
480 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
43563383 |
catgttttcttaccgtcacttcatgattggacatcttaccataaaaatcaaaagctactatttgtagcttcaacttcaacgtgatgttttaccgtgattt |
43563284 |
T |
|
| Q |
481 |
caaaacctcgtacatcgtattcaaacacttgcttatatataaaagattgcaccaaatcccactttatgattgcatgtttctagcaaggtaaaactcacaa |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| | | ||||||| ||||||||||||||||| |
|
|
| T |
43563283 |
caaaacctcgtacatcgtattcaaacacttacttatatataagagatcgcaccaaatcccactttatgatcgtaagtttctaccaaggtaaaactcacaa |
43563184 |
T |
|
| Q |
581 |
tcatatgtaagagatgttttcatgg |
605 |
Q |
| |
|
||| |||| ||||| |||||||||| |
|
|
| T |
43563183 |
tcacatgtgagagaggttttcatgg |
43563159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 24140770 - 24140736
Alignment:
| Q |
455 |
ttcaacgtgatgttttgccgtgatttcaaaacctc |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24140770 |
ttcaacgtgatgttttgccgtgatttcaaaacctc |
24140736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University