View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_high_21 (Length: 286)
Name: NF21615_high_21
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 3593204 - 3593467
Alignment:
| Q |
16 |
attttaatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgatgaagatgaagtttatttagttatcttaggatc |
115 |
Q |
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| T |
3593204 |
attttaatgttatataaagttagggaattgttaaaatttgttcaagggagttagaagtttgtgatgatgaagatgaagtttatttagttatcttaggatc |
3593303 |
T |
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| Q |
116 |
atatataaaggtgtatcctac-ttatttgtatcatattcttcattctattaattttaaatacattaaaatggtaaattaatgtatacaattgggttagaa |
214 |
Q |
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| T |
3593304 |
atatataaaggtgtatcctaccttatttgtatcatattcttcattctattaattttaaatacattaaaatggtagattaatgtatacaattgggttagaa |
3593403 |
T |
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| Q |
215 |
attaggatcattctttaagtgaaggttattattatttttaattgtttgttagtggttgatgatg |
278 |
Q |
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| T |
3593404 |
attaggattattctttaagtgaaggttattattatttttaattgtttgttagtggtttatgatg |
3593467 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 38467170 - 38467247
Alignment:
| Q |
99 |
ttagttatcttaggatca-tatataaaggtgtatcctact-tatttgtatcatattcttcattctattaattttaaat |
174 |
Q |
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| T |
38467170 |
ttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattcttcattctactatttttaaat |
38467247 |
T |
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