View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_high_26 (Length: 249)
Name: NF21615_high_26
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3332103 - 3331868
Alignment:
| Q |
1 |
caccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaa |
100 |
Q |
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| T |
3332103 |
caccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatccaa |
3332004 |
T |
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| Q |
101 |
agttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaatttattaaaaag |
200 |
Q |
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| T |
3332003 |
agttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaattaatgaaaaag |
3331904 |
T |
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| Q |
201 |
cagataggattagagagtcctacctggcaacatctt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3331903 |
cagataggattagagagtcctacctggcaacatctt |
3331868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 3338421 - 3338349
Alignment:
| Q |
12 |
aatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaac |
84 |
Q |
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|||||| ||||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
3338421 |
aatttcttatctctagaagaaacaatagtattcatacataaaaacaatactatcaaagccaatgtgtagaaac |
3338349 |
T |
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