View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_high_30 (Length: 220)

Name: NF21615_high_30
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_high_30
NF21615_high_30
[»] chr8 (9 HSPs)
chr8 (8-220)||(3423669-3423881)
chr8 (21-166)||(34653276-34653420)
chr8 (52-142)||(13636244-13636334)
chr8 (52-142)||(13736657-13736747)
chr8 (27-133)||(24334458-24334564)
chr8 (3-102)||(22488845-22488944)
chr8 (30-143)||(41086819-41086932)
chr8 (61-132)||(3670555-3670626)
chr8 (43-132)||(44167176-44167265)
[»] chr2 (12 HSPs)
chr2 (8-144)||(16209793-16209929)
chr2 (41-143)||(4818743-4818843)
chr2 (49-154)||(29140163-29140269)
chr2 (62-144)||(38373365-38373447)
chr2 (72-133)||(19028478-19028539)
chr2 (43-144)||(30554532-30554638)
chr2 (30-120)||(14818824-14818914)
chr2 (55-128)||(4604675-4604747)
chr2 (3-104)||(8793850-8793951)
chr2 (87-150)||(18967757-18967820)
chr2 (27-143)||(34466981-34467096)
chr2 (72-144)||(35005222-35005294)
[»] chr7 (9 HSPs)
chr7 (19-144)||(45411265-45411390)
chr7 (32-132)||(46288819-46288919)
chr7 (46-136)||(40024192-40024282)
chr7 (88-149)||(21946151-21946212)
chr7 (13-133)||(2256404-2256523)
chr7 (3-142)||(23070190-23070329)
chr7 (30-101)||(23705039-23705110)
chr7 (65-136)||(31245262-31245333)
chr7 (66-131)||(12139824-12139887)
[»] chr1 (10 HSPs)
chr1 (28-161)||(30264067-30264205)
chr1 (28-136)||(30350735-30350843)
chr1 (8-127)||(9552818-9552937)
chr1 (18-142)||(46536653-46536777)
chr1 (71-142)||(26768708-26768778)
chr1 (44-141)||(12188639-12188736)
chr1 (49-104)||(50014189-50014244)
chr1 (66-144)||(8772434-8772512)
chr1 (71-103)||(52426245-52426277)
chr1 (82-143)||(16632750-16632811)
[»] chr5 (9 HSPs)
chr5 (13-154)||(30251934-30252075)
chr5 (19-135)||(1637963-1638079)
chr5 (44-136)||(26402019-26402111)
chr5 (66-142)||(10418601-10418677)
chr5 (8-60)||(20429799-20429851)
chr5 (81-144)||(25731219-25731282)
chr5 (28-144)||(12487100-12487217)
chr5 (8-96)||(34596489-34596578)
chr5 (43-144)||(42641116-42641217)
[»] chr3 (11 HSPs)
chr3 (9-142)||(35744679-35744814)
chr3 (48-169)||(20137590-20137709)
chr3 (15-113)||(40394905-40395003)
chr3 (44-142)||(47510750-47510848)
chr3 (43-131)||(29398268-29398356)
chr3 (48-169)||(23278016-23278135)
chr3 (75-147)||(41632026-41632098)
chr3 (28-103)||(11529304-11529379)
chr3 (3-144)||(4195301-4195442)
chr3 (62-104)||(42426246-42426288)
chr3 (58-142)||(44765299-44765383)
[»] chr4 (11 HSPs)
chr4 (8-144)||(16502389-16502524)
chr4 (44-144)||(14124203-14124303)
chr4 (52-136)||(51088916-51089000)
chr4 (44-104)||(2392597-2392657)
chr4 (8-60)||(5324605-5324657)
chr4 (49-169)||(34341398-34341518)
chr4 (72-103)||(32906156-32906187)
chr4 (13-147)||(41259984-41260118)
chr4 (30-106)||(53650078-53650155)
chr4 (30-142)||(33027147-33027258)
chr4 (75-111)||(42009690-42009726)
[»] chr6 (3 HSPs)
chr6 (16-135)||(2223669-2223788)
chr6 (44-154)||(23131454-23131564)
chr6 (62-144)||(29694306-29694388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (66-143)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 3423881 - 3423669
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 107  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  3423881 ctaatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaag 3423782  T
Q  108 ttttagttacaaagttacttattttagtattttaaccgatacctcaacgacactagttagcannnnnnnnnnnngaacaaaatttgagatattatcccga 207  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  3423781 ttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccga 3423682  T
Q  208 tttacttgatatt 220  Q
    ||||| |||||||    
T  3423681 tttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 34653276 - 34653420
Alignment:
Q  21 taagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 120  Q
    |||||| |||||||||  ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   ||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  121 gttacttattttagtattttaaccgatacctcaacgacactagtta 166  Q
    |||||||||||||||| ||||| | || |||||| | |||||||||    
T  34653375 gttacttattttagtactttaatcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  52 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  52 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 24334564 - 24334458
Alignment:
Q  27 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 126  Q
    ||||||||||  |||| ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || ||    
T  24334564 taatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgct 24334465  T
Q  127 tatttta 133  Q
    |||||||    
T  24334464 tatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 22488944 - 22488845
Alignment:
Q  3 tcttcctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 102  Q
    |||| |||| ||||||| ||||||||||||||||  | |  |||| |||||| | |||||||||||| |||||||| | |||| ||||||||||| ||||    
T  22488944 tcttgctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagttac 22488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 41086819 - 41086932
Alignment:
Q  30 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttactta 128  Q
    |||||||| ||| |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| |||||||    
T  41086819 tggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattactta 41086917  T
Q  129 ttttagtattttaac 143  Q
    |||| ||| ||||||    
T  41086918 ttttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  61 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 132  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  43 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 132  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 16209793 - 16209929
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 107  Q
    |||||||||| |||||||| ||||||||| ||||  | ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| ||||||||     
T  16209793 ctaatcagtgtcttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaac 16209892  T
Q  108 ttttagttacaaagttacttattttagtattttaacc 144  Q
    |||| |||  ||||||||||||||||||| |||||||    
T  16209893 tttttgttttaaagttacttattttagtactttaacc 16209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 4818743 - 4818843
Alignment:
Q  41 tttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttt 140  Q
    |||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| |||    
T  4818743 tttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttt 4818840  T
Q  141 aac 143  Q
    |||    
T  4818841 aac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  49 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 147  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  148 acctcaa 154  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  62 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  72 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 133  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  43 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 137  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  138 tttaacc 144  Q
    |||||||    
T  30554538 tttaacc 30554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 14818914 - 14818824
Alignment:
Q  30 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 120  Q
    |||||||| ||| |||||| ||||| |  |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818914 tggttaaagaatctattagaagaaacttggttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  55 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 128  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 8793951 - 8793850
Alignment:
Q  3 tcttcctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 102  Q
    |||| |||| ||||||| |||||| | |||||||  ||| || || |||||| | ||| ||||||||  ||||||||||||||||||| |||||||| ||    
T  8793951 tcttgctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttggaaatataagtttttatttttgtcttggcaataatcac 8793852  T
Q  103 ac 104  Q
    ||    
T  8793851 ac 8793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  87 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 150  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 34466981 - 34467096
Alignment:
Q  27 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 126  Q
    |||| ||||| ||||| ||||||| ||| | ||||||| ||||| || |||||| |||  | |||||||||||||||||| |||   ||| ||| |||||    
T  34466981 taatagttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttact 34467079  T
Q  127 tattttagtattttaac 143  Q
    ||||||| || ||||||    
T  34467080 tattttaatactttaac 34467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  72 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 45411390 - 45411265
Alignment:
Q  19 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 118  Q
    |||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| |    
T  45411390 cttaagagcaatggttaaagaattcatttatagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttata 45411291  T
Q  119 aagttacttattttagtattttaacc 144  Q
    |||||||||||||||||| |||||||    
T  45411290 aagttacttattttagtactttaacc 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 46288819 - 46288919
Alignment:
Q  32 gttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 131  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || |||||||    
T  46288819 gttaaaaaatttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttattt 46288918  T
Q  132 t 132  Q
    |    
T  46288919 t 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  46 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 136  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  88 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 149  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 2256404 - 2256523
Alignment:
Q  13 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 112  Q
    ||||||||||||||||||| ||||  | |  |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | ||||     
T  2256404 cagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttc 2256502  T
Q  113 gttacaaagttacttatttta 133  Q
    | | |||| ||||||||||||    
T  2256503 gatgcaaacttacttatttta 2256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 23070190 - 23070329
Alignment:
Q  3 tcttcctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 102  Q
    |||| |||| ||||||| |||||  ||||||||| || |  |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| |||||    
T  23070190 tcttgctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattac 23070289  T
Q  103 acaaattttagttacaaagttacttattttagtattttaa 142  Q
    || | |||| | | |||| |||||||||||| || |||||    
T  23070290 accacttttcgatgcaaatttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 23705110 - 23705039
Alignment:
Q  30 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataatta 101  Q
    |||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| ||||  |||| |||||||||    
T  23705110 tggttaaagaatctattagttgaaattttgtcttggaaatgcatgtttttactttttccttaacaataatta 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  65 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 136  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  66 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 131  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 30264067 - 30264205
Alignment:
Q  28 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagt 122  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||    
T  30264067 aatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagt 30264166  T
Q  123 tacttattttagtattttaaccgatacctcaacgacact 161  Q
    ||||||||||| || ||||||  ||| ||||| ||||||    
T  30264167 tacttattttaataatttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 30350843 - 30350735
Alignment:
Q  28 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 127  Q
    |||||||||  ||| ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || |||||||||||    
T  30350843 aatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttactt 30350744  T
Q  128 attttagta 136  Q
    |||||||||    
T  30350743 attttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 9552937 - 9552818
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 107  Q
    |||| ||||| |||||||| |||| ||||| ||| ||||| || |||||   |||||||||||||||| |||| |||||||||| |||||||||||||      
T  9552937 ctaaccagtgtcttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacc 9552838  T
Q  108 ttttagttacaaagttactt 127  Q
    |||| |||  ||||||||||    
T  9552837 tttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 46536777 - 46536653
Alignment:
Q  18 ccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac 117  Q
    ||||||||  ||| ||||||||||| || |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |    
T  46536777 ccttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgc 46536678  T
Q  118 aaagttacttattttagtattttaa 142  Q
    ||| |||||||||||| || |||||    
T  46536677 aaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  71 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 141  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  49 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 104  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  66 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  71 caagtttttatttttgtcttagcaataattaca 103  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  82 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 143  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 30251934 - 30252075
Alignment:
Q  13 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 112  Q
    ||||||| |||||| |||||||||  | |  |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | ||||     
T  30251934 cagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttc 30252033  T
Q  113 gttacaaagttacttattttagtattttaaccgatacctcaa 154  Q
    | ||||||  || ||||||||||| ||||||| |||||||||    
T  30252034 gatacaaatatatttattttagtactttaaccaatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 1637963 - 1638079
Alignment:
Q  19 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 118  Q
    |||||||| |||||||||  | | ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | ||    
T  1637963 cttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgca 1638062  T
Q  119 aagttacttattttagt 135  Q
    || ||| ||||||||||    
T  1638063 aacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 136  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  66 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 142  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 20429851 - 20429799
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 60  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  20429851 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 20429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  81 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 12487100 - 12487217
Alignment:
Q  28 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtct-tagcaataattacacaaattttagttacaaagttact 126  Q
    |||||||||  ||| |||||||||||||| ||| ||| |||| ||| |||||| ||||||||   | ||||||||||||| | || |||  |||||||||    
T  12487100 aatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttact 12487199  T
Q  127 tattttagtattttaacc 144  Q
    | ||||| || |||||||    
T  12487200 tgttttaatactttaacc 12487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 34596489 - 34596578
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagt-ttttatttttgtcttagcaat 96  Q
    |||| ||||||  ||| ||||||||||| ||| |||||||||| ||||| | | |||| ||| ||||| |||||||||| ||||||||||    
T  34596489 ctaaccagtgctctaaaggtaatggttataaattttattagtaaaaattttatcttgggaatacaagtattttatttttttcttagcaat 34596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  43 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  143 cc 144  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 35744679 - 35744814
Alignment:
Q  9 taatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaat 108  Q
    ||||||||||  || | ||| ||||||| ||||  |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| ||    
T  35744679 taatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatat 35744777  T
Q  109 t---ttagttacaaagttacttattttagtattttaa 142  Q
    |   || |||||||| |||||||||||| || |||||    
T  35744778 ttaatttgttacaaaattacttattttaatactttaa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  48 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 147  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  148 acctcaacgacactagttagca 169  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 40395003 - 40394905
Alignment:
Q  15 gtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 113  Q
    ||||| ||||| ||||| ||||  |||||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40395003 gtgccataaggataatgattaaggaatttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  43 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 131  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  48 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 147  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  148 acctcaacgacactagttagca 169  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  75 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 147  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 11529304 - 11529379
Alignment:
Q  28 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattaca 103  Q
    |||||||||| |||  |||||||||| || ||| ||||| ||||||||||||| |||| |||| | ||||||||||    
T  11529304 aatggttaaagaatccattagtagaagttttgtcttggagatgcaagtttttacttttatcttggtaataattaca 11529379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 4195301 - 4195442
Alignment:
Q  3 tcttcctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagttttta-tttttgtcttagcaataatta 101  Q
    |||| |||| |||||||||||||| |||||||||  | |  |||| ||| |||| |||||||||||| ||| | |||| ||||  ||||||||| |||||    
T  4195301 tcttgctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttacttttcttcttagcaa-aatta 4195399  T
Q  102 cacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    ||| | ||||   | |||| ||||||||||||||| |||||||    
T  4195400 caccatttttttatgcaaacttacttattttagtactttaacc 4195442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  62 ttggaaatgcaagtttttatttttgtcttagcaataattacac 104  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  58 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 142  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 16502389 - 16502524
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 107  Q
    |||| ||||||| |||||| |||||||||  |||  ||||||||||| | ||| |||||||| ||| |||||| |||| |||| |||||| ||||||||     
T  16502389 ctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaac 16502487  T
Q  108 ttttagttacaaagttacttattttagtattttaacc 144  Q
    |||| |||  | ||||||||||||||||| |||||||    
T  16502488 tttttgttttagagttacttattttagtactttaacc 16502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 143  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  144 c 144  Q
    |    
T  14124203 c 14124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  52 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 136  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 104  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 5324657 - 5324605
Alignment:
Q  8 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 60  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  5324657 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 5324605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  49 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 148  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  149 cctcaacgacactagttagca 169  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  72 aagtttttatttttgtcttagcaataattaca 103  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 41259984 - 41260118
Alignment:
Q  13 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 112  Q
    ||||||| |||||| |||||||||  | |  |||| |||||| | ||| ||| |||| ||||| ||||||||| | ||| |||| ||||||| | ||||     
T  41259984 cagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttc 41260083  T
Q  113 gttacaaagttacttattttagtattttaaccgat 147  Q
    | | |||| |||||||||||| || ||||||||||    
T  41260084 gatgcaaacttacttattttaatactttaaccgat 41260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 53650155 - 53650078
Alignment:
Q  30 tggttaaaaaatttattagtagaaattatgttttggaaatgcaag-tttttatttttgtcttagcaataattacacaa 106  Q
    |||||||  |||| ||||||||||||| ||||||| ||||  ||  |||||| ||||||||||||||||| |||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaataaatacacaa 53650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 33027147 - 33027258
Alignment:
Q  30 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttat 129  Q
    ||||||| ||||| ||||||| ||||| ||||||| |||| |||  ||||||| || | |||| |||||||| ||   |||| | |||||| ||||||||    
T  33027147 tggttaagaaattcattagtaaaaattttgttttg-aaatacaaaattttattcttattttagaaataattatactgctttttgatacaaacttacttat 33027245  T
Q  130 tttagtattttaa 142  Q
    |||| ||||||||    
T  33027246 tttaatattttaa 33027258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  75 tttttatttttgtcttagcaataattacacaaatttt 111  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 2223788 - 2223669
Alignment:
Q  16 tgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagtt 115  Q
    ||||||||| |||||| ||||  ||| |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| |||    
T  2223788 tgccttaagagtaatgattaaggaatctattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgtt 2223689  T
Q  116 acaaagttacttattttagt 135  Q
     ||| |||||||||||||||    
T  2223688 gcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  44 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 143  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  144 cgatacctcaa 154  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  62 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 144  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  66 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 143  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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