View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_high_4 (Length: 561)
Name: NF21615_high_4
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 24 - 561
Target Start/End: Original strand, 14782344 - 14782881
Alignment:
| Q |
24 |
gccataaccgtcacccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccgccgtcccacgccattcctaccg |
123 |
Q |
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| T |
14782344 |
gccataaccgtcacccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccaccgtcccatgccattcctaccg |
14782443 |
T |
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| Q |
124 |
tcgctaaaaccgtcgctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaaccttctccataactggtaaata |
223 |
Q |
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| T |
14782444 |
tcgctaaaaccgtcgctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaactttctccataactggtaaata |
14782543 |
T |
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| Q |
224 |
aagtgcaaataacaaccctgcaccaagggtgcaaaagaatccaataaagtattcttttttcgttagtccttttggtctctcagcactagaattcaatgca |
323 |
Q |
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| T |
14782544 |
aagtgcaaataacaaccctgcaccaagggtgcaaaagaatccaataaagtattctttttttgttagtccttttggtctctcactactagaattcaatgca |
14782643 |
T |
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| Q |
324 |
agaatgattgaactcaatgtgagaagaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaa |
423 |
Q |
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| T |
14782644 |
agaatgattgaactcaatgtgagaagaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaa |
14782743 |
T |
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| Q |
424 |
gctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaat |
523 |
Q |
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| T |
14782744 |
gctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaat |
14782843 |
T |
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| Q |
524 |
tgatagggttaacatttttggtgtgaaatcagtgaaag |
561 |
Q |
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| T |
14782844 |
tgatagggttaacattttcggtgtgaaatcagtgaaag |
14782881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 468
Target Start/End: Original strand, 14774467 - 14774911
Alignment:
| Q |
24 |
gccataaccgtcacccaataaaccctacttcccttgtcaaaaacctcctcactttctctcttcatttctttaaatccgccgtcccacgccattcctaccg |
123 |
Q |
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| T |
14774467 |
gccataactgtcacccaataaaccaaacttcccttatcaaaaatttcttcactttctctcttcatttcagaaaatccaccatccattcccatacctatag |
14774566 |
T |
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| Q |
124 |
tcgctaaaaccgtcgctgcaatctccattataagctgcatttccatcaccatttcgtaacaataaacctttttataaaccttctccataactggtaaata |
223 |
Q |
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| T |
14774567 |
tagctaaaacagtggctgcaatctccattataagctgcatttccatcaccatttcataacaataaacatctttataaaccttctccatcactggtaaata |
14774666 |
T |
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| Q |
224 |
aagtgcaaataacaaccctgcaccaagggtgcaaaagaatccaataaagtattcttttttcgttagtccttttggtctctcagcactagaattcaatgca |
323 |
Q |
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| T |
14774667 |
caatgcaaataacaaccctgcaccaattgtgcaaaagaatccaataaagtactcttttttagttagcccatttggtttttcattactagaatccaatgca |
14774766 |
T |
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| Q |
324 |
agaatgattgaactcaatgtgagaagaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaa |
423 |
Q |
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|||| ||| ||||| | ||| ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| | || |||| ||||||||||| | |
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| T |
14774767 |
agaaggatagaacttagtgtaagaaggatcacacagttgagatttgaaaaggtgattttttgcttcacaatgataacagaaagaacaagattgaaaacta |
14774866 |
T |
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| Q |
424 |
gctgtgaagatagcaaaagtgctgaagttgaaacaggtagatatg |
468 |
Q |
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| T |
14774867 |
gctgtgaagataacaaaagggctgaggttgaaacaggtagatatg |
14774911 |
T |
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