View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_high_6 (Length: 547)
Name: NF21615_high_6
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_high_6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 9450376 - 9449830
Alignment:
| Q |
1 |
cactgcagctgtggaaactggtatttttagatgaactagtgatatctttgcatccgaaagctaagagaaaatagctaaaatatgaatttgcgtgaagttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9450376 |
cactgcagctgtggaaactggtatttttagatgaactagtgatatctttgcatcccaaagctaagagaaaatagctaaaatatgaatttgtgtgaagttt |
9450277 |
T |
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| Q |
101 |
gtgtgtagtttgggataaaataaacctagttagtttgttttattttaaaacttaatacaacaggcacaggaaaaatgtcacaatgtcgcatctctcctga |
200 |
Q |
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| T |
9450276 |
gtttgtagtttgggataaaataaacctagttagtttgttttattttaaaacttaatacaacaggcacaggaaaaatgtcacaatttcgcatctctcctga |
9450177 |
T |
|
| Q |
201 |
caaagaaaatatcagtggaacatgatttcatattaatccatattcgaccaataacactcagttgtattcatatatatgggattaaattgcgagtcatgcg |
300 |
Q |
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| T |
9450176 |
caaagaaaatatcagtggaacatgatttcatattaatccatattcgaccaataacactcagttgtattcatatatatgggattaaattgcgagtcatgcg |
9450077 |
T |
|
| Q |
301 |
aagagaccacaaacaaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatgatctgccggtattaaaatactttt |
400 |
Q |
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| T |
9450076 |
aagagaccacaaacaaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatgatctgccggtattaaaatactttt |
9449977 |
T |
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| Q |
401 |
ttaatgcaaggtttcagctctgctggtatgccataatcagaacaatttaaattttcaatgttgttctgatttacttatctatgacttaatctgtcctcgt |
500 |
Q |
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| T |
9449976 |
ttaatgcaaggtttcagctctgctggtatgccataatcagaacaatttaaattttcaacgttgttctgatttacttatctatgacttaatctgtcctcgt |
9449877 |
T |
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| Q |
501 |
tgtttcttgtttattttatttctgtaatcaatgaggcgcctaagccc |
547 |
Q |
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| T |
9449876 |
tgtttcttgtttattttatttctgtaatcaatgaggcgcctaagccc |
9449830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 28830743 - 28830977
Alignment:
| Q |
4 |
tgcagctgtggaaactggtatttttagatgaactagtgatatctttgcatccgaaa-gctaagagaaaatagctaaaatatgaatttgcgtgaagtttgt |
102 |
Q |
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|||||||| ||||||| |||||||||| |||||| |||||||||||||| | ||| |||||| | |||||||||||||||||||||| || | ||||| |
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| T |
28830743 |
tgcagctgcggaaactagtatttttaggtgaactgctgatatctttgcattccaaatgctaagtgcaaatagctaaaatatgaatttgtgtagattttgt |
28830842 |
T |
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| Q |
103 |
gtgtagtttgggataaaataaacctagttagtttgttttattttaaaacttaatacaacaggcacaggaaaaatgtcacaatgtcgcatctctcctgaca |
202 |
Q |
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| T |
28830843 |
ttgtagtttaggataaaataaacctagctagtttgttttattttgaaacttaaaacaacaggcagaggaaaaatgtcacaatttcgcatctctccggata |
28830942 |
T |
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| Q |
203 |
aagaaaatatcagtggaacatgatttcatattaat |
237 |
Q |
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| T |
28830943 |
aagaaaatattagtggaacatgatttcatattaat |
28830977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 131 - 380
Target Start/End: Original strand, 28838955 - 28839220
Alignment:
| Q |
131 |
tagtttgttttattttaaaacttaatacaacaggcacaggaaaaatgtcacaatgtcgcatctctcctgacaaagaaaatatcagtggaacatgatttca |
230 |
Q |
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||||||||||||||||||||||||| | |||||| | ||||||||||||||||| | | |||||||| ||| |||| ||| ||||||||||||||||| |
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| T |
28838955 |
tagtttgttttattttaaaacttaaaagaacaggtagaggaaaaatgtcacaattttgtatctctccgaacagcgaaagtattagtggaacatgatttca |
28839054 |
T |
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| Q |
231 |
tattaatccatat----------------tcgaccaataacactcagttgtattcatatatatgggattaaattgcgagtcatgcgaagagaccacaaac |
314 |
Q |
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| T |
28839055 |
tattaattaagaaaactagtttaatcacatcgaccaataagactcggttgtattcatttatatggtattaaattgtgagtcatgtgaagagaccacaaac |
28839154 |
T |
|
| Q |
315 |
aaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatgatct |
380 |
Q |
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| T |
28839155 |
aaacttaaaatttatcttataaaattgaccggaataagtatttactaatattttatcatatgatct |
28839220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 28831082 - 28831180
Alignment:
| Q |
279 |
ggattaaattgcgagtcatgcgaagagaccacaaacaaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatga |
377 |
Q |
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| T |
28831082 |
ggattaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtcttttataaaaatgaccggaaggtttatgtcctaatattttatcatatga |
28831180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 28838860 - 28838943
Alignment:
| Q |
7 |
agctgtggaaactggtatttttagatgaactagtgatatctttgcatccgaaagctaagagaaaatagctaaaatatgaatttg |
90 |
Q |
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| T |
28838860 |
agctgtggaaaccgatagttttagttgtactggtgatatatttgcatcccaaagctaagagaaaatagctaaaatgtgaatttg |
28838943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 380
Target Start/End: Complemental strand, 1466452 - 1466059
Alignment:
| Q |
4 |
tgcagctgtggaaactggtatttttagatgaactagtgatatctttgcatccgaaagctaagagaaaatagctaaaatatgaatttgcgtgaagtttgtg |
103 |
Q |
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||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
1466452 |
tgcagctgtggaaactgatatttttagttgaactggtgatatctttgcatccaaaagctaagagaaaatagctaagatatgaatttttgtaaagtttgtt |
1466353 |
T |
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| Q |
104 |
tgtagtttgggataaaataaacctagttagtttgttttattttaaaacttaatacaacaggcacaggaaaaatgtcacaatgtcgcatctctcctgacaa |
203 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||| ||||||||||| ||||| |||||||||||| ||||| |
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| T |
1466352 |
tgtagtttgggataaaataaacatagcgagtttgttttgttttaaaacttagaacaacaggcagaggaaaaatgttacaatttcgcatctctccggacaa |
1466253 |
T |
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| Q |
204 |
agaaaatatcagtggaacatgatttcatatta-----------------atccatattcgaccaataacactcagttgtattcatatatatgggattaaa |
286 |
Q |
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| T |
1466252 |
agaaaatattagtggaatatgatttcatattaattaagaaaactgatttatccgtattcaaccaataacactcagttgtattcatatatatgggattaaa |
1466153 |
T |
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| Q |
287 |
ttgcgagtcatgcgaagagaccacaaacaaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatgatct |
380 |
Q |
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| T |
1466152 |
ttgtgagtcataagaagagaccacaaacaaacttaaaatttctcttacaaaaatgaccagaatgagtatttactaatattgtatcatatgatct |
1466059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 47227677 - 47227628
Alignment:
| Q |
178 |
tcacaatgtcgcatctctcctgacaaagaaaatatcagtggaacatgatt |
227 |
Q |
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| T |
47227677 |
tcacaatttcacatctctccagacaatgaaaatattagtggaacatgatt |
47227628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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