View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21615_low_10 (Length: 461)
Name: NF21615_low_10
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 214 - 448
Target Start/End: Original strand, 55759942 - 55760176
Alignment:
| Q |
214 |
ttgattcatcaagcataagattaaatttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaaaagaaggaagaaatattgagggaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55759942 |
ttgattcatcaagcataagattaaatttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaaaagaaggaagaaatattgagggaa |
55760041 |
T |
|
| Q |
314 |
aaaacaataaatgaaattggagcaaagagaactcagactcagctgggttacaaaacaaagaaacaaaaggcaaaggaaagaaaggcacatctgaatgaga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55760042 |
aaaacaataaatgaaattggagcaaagagaactcagactcagatgggttacaaaacagagaaacaaaaggcaaaggaaagaaaggcacatctgaatgaga |
55760141 |
T |
|
| Q |
414 |
tgagtttattagaagtcaatctttatgttttccct |
448 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
55760142 |
tgagtttattagaagtcaatctttctgttttccct |
55760176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 55759671 - 55759827
Alignment:
| Q |
19 |
gaatgttaccgtaaagattcatcatcatcaataaggagtcatgaaaacgaaaagcaaatagcgataatgaatgttaccagaaaatgaaaacacttaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55759671 |
gaatgttaccgtaaagattcatcatcatcaataaggagtcatgaaaacgaaaagcaaatagcgataatgaatgttaccagaaaatgaaaacactgaaacc |
55759770 |
T |
|
| Q |
119 |
gtttcttggatgagagaaagcaatgcttgaaaggtttcacgatgaatgttgaagaaga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55759771 |
gtttcttggatgagagaaagcaatgcttg-aaggtttcacgatgaatgttgaagaaga |
55759827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 191 - 381
Target Start/End: Complemental strand, 38939723 - 38939537
Alignment:
| Q |
191 |
ttggccttgtagtattattcattttgattcatcaagcataagattaaa-tttcataaaattaatagttataagatgtatatgtgatatgatttaagtgaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
38939723 |
ttggccttgtagtattattcattttgaatagt-aagcataagattaaaatttcataaaatttata-ttataagatgtat--gtgatttgatttaagtgaa |
38939628 |
T |
|
| Q |
290 |
aagaaggaagaaatattgagggaaaaaacaataaatgaaattggagcaaagagaactcagactcagctgggttacaaaacaaagaaacaaaa |
381 |
Q |
| |
|
| ||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38939627 |
a-gaaggaagagatactgagggaaaaaacaataaatgaaatcggtgcaaagagaactcaaactcagctgggttacaaaacagagaaacaaaa |
38939537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 38940009 - 38939923
Alignment:
| Q |
19 |
gaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgttaccagaaaat |
103 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| |||||||||| |||||| |
|
|
| T |
38940009 |
gaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacctgaaaat |
38939923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University