View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_low_11 (Length: 425)
Name: NF21615_low_11
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 35 - 425
Target Start/End: Complemental strand, 3593946 - 3593556
Alignment:
| Q |
35 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
134 |
Q |
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| T |
3593946 |
cattttagccaaataagatctgaatgtgaattatgtgatccagttacatcaccaaactctgagaataagaatatcttctagggtgcaaattcatgtagta |
3593847 |
T |
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| Q |
135 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaataaacactatggaccaagatacc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3593846 |
ctacagaggtctattttttgttggttaatagctcagcaataatataagtaacgacaagcaaaaacaaacattagaaatgaacactatggaccaagatacc |
3593747 |
T |
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| Q |
235 |
ctacactgttacttgtattaatttatgaaactaagacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
334 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3593746 |
ctacactgttacttgtattaatttatgaaactaaaacaaaaatgaaaacatcatgtgatgattatgaactacaagcccacataatagtagcaataaaata |
3593647 |
T |
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| Q |
335 |
ttagcaaccataattctttcattctgtaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgatcaatcaaatcattgt |
425 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3593646 |
ttagcaaccataattctttcattctggaccagtaacaaagaatgattctcaacaagtggttgtgatgaatattgagcaatcaaatcattgt |
3593556 |
T |
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