View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_13 (Length: 410)

Name: NF21615_low_13
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_13
NF21615_low_13
[»] chr6 (7 HSPs)
chr6 (1-393)||(7993254-7993646)
chr6 (114-248)||(6417164-6417298)
chr6 (290-325)||(6437159-6437194)
chr6 (282-345)||(19633346-19633409)
chr6 (282-344)||(10578796-10578858)
chr6 (282-334)||(6433088-6433140)
chr6 (40-76)||(8913442-8913478)
[»] chr8 (1 HSPs)
chr8 (283-349)||(32152209-32152275)
[»] chr4 (6 HSPs)
chr4 (283-348)||(1547447-1547512)
chr4 (283-344)||(1552275-1552336)
chr4 (283-325)||(2460600-2460642)
chr4 (283-332)||(6007668-6007717)
chr4 (283-325)||(2367690-2367732)
chr4 (283-332)||(2486310-2486359)
[»] chr7 (4 HSPs)
chr7 (114-236)||(10615785-10615907)
chr7 (299-345)||(10168806-10168852)
chr7 (299-345)||(10176331-10176377)
chr7 (299-345)||(15091349-15091395)
[»] chr1 (2 HSPs)
chr1 (283-325)||(15837977-15838019)
chr1 (301-346)||(33161454-33161499)
[»] chr3 (2 HSPs)
chr3 (282-346)||(51763145-51763209)
chr3 (283-325)||(51112973-51113015)
[»] chr5 (3 HSPs)
chr5 (282-348)||(17205958-17206024)
chr5 (283-325)||(32268773-32268815)
chr5 (287-332)||(12846943-12846988)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 7993646 - 7993254
Alignment:
Q  1 ttggcaatgaataacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaagttttaatgttttgcgcaaatgctcgcagaccatagc 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||     
T  7993646 ttggcaatgagtaacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccatagg 7993547  T
Q  101 cgggaaagatgccttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaaggtcacaacggtagtt 200  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  7993546 cgggaaagttgcattggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccgcagaaacttgtcaaggtcacaatggtagtt 7993447  T
Q  201 cgagaggttgagggagttaaggttagtgaatcttttgaataggcgacatagaaaagtccgcgatgcatcgtggaaagtgtatgagaatcggagacggctg 300  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7993446 cgagaggttgagggagttaaggttagtgaatctttcgaatatgcgacatagaaaagtccgcgatgcatcgtagaaagtgtatgagaatcggagacggctg 7993347  T
Q  301 gtgatggagaggaactgtttggagatgagggataaagaattcaagtagaagttgttgcgactgttgtggtcgtagttgggtatatgtgaatat 393  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  7993346 gtgatggagaggaactgtttggagacgagagataaagaattcaagtagtggttgttgcgactgttgtggtcatagttgggtatatgtgaatat 7993254  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 6417164 - 6417298
Alignment:
Q  114 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaaggtcacaacggtagttcgagaggttgagg 213  Q
    ||||| |||||||||||| |||||||||||||||||||| |||  ||||||||  |||||||     |||||||| | | |  ||   | ||||||||||    
T  6417164 ttggttggagatattaagtgatgtgatgttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagg 6417263  T
Q  214 gagttaaggttagtgaatcttttgaataggcgaca 248  Q
    || |||||||| ||||||||||| || ||||||||    
T  6417264 gaattaaggtttgtgaatcttttaaagaggcgaca 6417298  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 6437159 - 6437194
Alignment:
Q  290 ggagacggctggtgatggagaggaactgtttggaga 325  Q
    |||||||| |||||||||||||||||||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggaga 6437194  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 19633346 - 19633409
Alignment:
Q  282 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaag 345  Q
    ||||||| ||||||   |||| || ||||||||||||||||||| |||||||| ||||||||||    
T  19633346 tgagaataggagacaattggttattgagaggaactgtttggagacgagggatagagaattcaag 19633409  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 10578858 - 10578796
Alignment:
Q  282 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaa 344  Q
    ||||||| |||||| | |||| ||||||||||| |||||||||| ||| |||| |||||||||    
T  10578858 tgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 10578796  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 6433088 - 6433140
Alignment:
Q  282 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggata 334  Q
    ||||||| ||||| || |||||| ||||||||||| |||||||| ||||||||    
T  6433088 tgagaataggagatggttggtgacggagaggaactatttggagacgagggata 6433140  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 8913478 - 8913442
Alignment:
Q  40 ttggaacaattgagagaggtcaaagttttaatgtttt 76  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  8913478 ttggaacaattgagagaggtcaaagttgtaatctttt 8913442  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 32152209 - 32152275
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtaga 349  Q
    ||||||||||||| | ||||||||||||||||||||||||||| |||||| |  |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaagtaga 32152275  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 1547512 - 1547447
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtag 348  Q
    ||||||||||||||| |||||||||||||||| ||||||||||  |||||||| || |||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagacaagggataatgacttcaagtag 1547447  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 1552336 - 1552275
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaa 344  Q
    |||||||||||||||  |||||| ||| ||||||||||||||| |||||||||||| |||||    
T  1552336 gagaatcggagacggtcggtgatagaggggaactgtttggagacgagggataaagacttcaa 1552275  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 2460600 - 2460642
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggaga 325  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggaga 2460642  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 6007668 - 6007717
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggagatgaggga 332  Q
    ||||||||||||| | |||||||||||||||||||||| |||| ||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacgaggga 6007717  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 2367732 - 2367690
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggaga 325  Q
    ||||||||||||||| ||||||||||||| || ||||||||||    
T  2367732 gagaatcggagacggttggtgatggagagaaattgtttggaga 2367690  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 2486310 - 2486359
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggagatgaggga 332  Q
    ||||||||||||||| |||||||||| || |||||||| |||| ||||||    
T  2486310 gagaatcggagacggttggtgatggacagaaactgttttgagacgaggga 2486359  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 10615785 - 10615907
Alignment:
Q  114 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaaggtcacaacggtagttcgagaggttgagg 213  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||  ||||||||  |||||||    |||||||||||   || ||   | ||||||||||    
T  10615785 ttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagg 10615884  T
Q  214 gagttaaggttagtgaatctttt 236  Q
    || |||||||| |||||||||||    
T  10615885 gaattaaggtttgtgaatctttt 10615907  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 10168852 - 10168806
Alignment:
Q  299 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 345  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  10168852 tggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 10176377 - 10176331
Alignment:
Q  299 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 345  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  10176377 tggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 15091395 - 15091349
Alignment:
Q  299 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 345  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||||    
T  15091395 tggtgatggagaggaactgtttggagacgagggagagagaattcaag 15091349  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 15838019 - 15837977
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggaga 325  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  15838019 gagaatcggagacggttggtgatggagagaaactgtttggaga 15837977  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 33161454 - 33161499
Alignment:
Q  301 gtgatggagaggaactgtttggagatgagggataaagaattcaagt 346  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||    
T  33161454 gtgatggagagaaactgtttggagacgagggatagagaattcaagt 33161499  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 51763209 - 51763145
Alignment:
Q  282 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagt 346  Q
    ||||||||||| ||||  |||||||||||||||||||||||| | || ||| | |||||||||||    
T  51763209 tgagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaagt 51763145  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 51113015 - 51112973
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggaga 325  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||    
T  51113015 gagaatcggagacggttggtgatggagaggaaccgtttcgaga 51112973  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 17205958 - 17206024
Alignment:
Q  282 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtag 348  Q
    ||||||||||| || |  |||||| ||||| ||||||||||||| |||||||| |||||| ||||||    
T  17205958 tgagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagagaatttaagtag 17206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 32268773 - 32268815
Alignment:
Q  283 gagaatcggagacggctggtgatggagaggaactgtttggaga 325  Q
    |||||||| |||||| ||||||||||||| |||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggaga 32268815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 12846943 - 12846988
Alignment:
Q  287 atcggagacggctggtgatggagaggaactgtttggagatgaggga 332  Q
    ||||||||||| ||||||||||||||||||| ||||| | ||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgaggga 12846988  T

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