View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_19 (Length: 316)

Name: NF21615_low_19
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_19
NF21615_low_19
[»] chr4 (14 HSPs)
chr4 (17-121)||(36911626-36911728)
chr4 (122-294)||(36663936-36664109)
chr4 (151-298)||(36634313-36634461)
chr4 (161-296)||(29678630-29678765)
chr4 (174-296)||(36911396-36911518)
chr4 (197-251)||(36632038-36632092)
chr4 (151-284)||(36641603-36641737)
chr4 (208-296)||(18361790-18361878)
chr4 (208-296)||(36601049-36601137)
chr4 (124-298)||(35974269-35974443)
chr4 (20-75)||(36641427-36641482)
chr4 (16-59)||(36634102-36634145)
chr4 (19-71)||(35970174-35970226)
chr4 (210-249)||(36612092-36612131)
[»] chr5 (2 HSPs)
chr5 (209-298)||(19656685-19656774)
chr5 (209-249)||(19673621-19673661)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 36911728 - 36911626
Alignment:
Q  17 tagctaaataagtatattacaatttggctttaaagttggagaccatcagctagataaagaggtcacgtgatagactaactgattgtcaaatcaaatatgt 116  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| || |||||||||||||||| ||||    
T  36911728 tagctaaataagtata--acaatttggctttaaaattggagaccatcagctagatgaagaggtcatgcgatagaccaaatgattgtcaaatcaaacatgt 36911631  T
Q  117 tttag 121  Q
    |||||    
T  36911630 tttag 36911626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 36663936 - 36664109
Alignment:
Q  122 cacaaagaaggcattataacttgtaaagcaatatgagaa-tcttcactgcctgttatctggaaatggacggttggagttagggtggtgcttctccacctt 220  Q
    ||||||| ||||||| ||||  | || |||||||||||| ||||||||| |  |||||| ||| |||   || || |||||| ||| ||||||||||||     
T  36663936 cacaaaggaggcattgtaacaagaaaggcaatatgagaactcttcactggccattatctagaagtggtgagtcggtgttaggttggcgcttctccacctc 36664035  T
Q  221 atcttcatttgatgattcatcatcctaaaggaagaaatactaccactatcaattgtcactgcaaaatcaatcat 294  Q
    ||||||||||||||||| ||||||||||||| |||||   || |||||||||||||||| |||||| |||||||    
T  36664036 atcttcatttgatgatttatcatcctaaaggcagaaaaggtatcactatcaattgtcaccgcaaaaacaatcat 36664109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 36634313 - 36634461
Alignment:
Q  151 aatatgagaa-tcttcactgcctgttatctggaaatggacggttggagttagggtggtgcttctccaccttatcttcatttgatgattcatcatcctaaa 249  Q
    |||||||||| ||||||||||   |||||| ||| ||||  ||||  |||||| |||||||| ||||||||||| ||||||||| ||| ||| |||||||    
T  36634313 aatatgagaactcttcactgctcattatctagaagtggagagttgttgttaggttggtgcttatccaccttatcgtcatttgattattaatcctcctaaa 36634412  T
Q  250 ggaagaaatactaccactatcaattgtcactgcaaaatcaatcatatga 298  Q
    || ||||| |  | |||| ||| ||||||||||||||| ||||||||||    
T  36634413 ggcagaaaaagaaacactgtcagttgtcactgcaaaattaatcatatga 36634461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 29678765 - 29678630
Alignment:
Q  161 tcttcactgcctgttatctggaaatggacggttggagttagggtggtgcttctccaccttatcttcatttgatgattcatcatcctaaaggaagaaatac 260  Q
    |||||||||||  |||||| ||| | ||  ||| | |||||| |||||||||||| |||||||||||||||| |||| ||| |||||||||  |||| |     
T  29678765 tcttcactgccctttatctagaagttgagagtttgtgttaggttggtgcttctccgccttatcttcatttgacgatttatcttcctaaaggtggaaaaag 29678666  T
Q  261 taccactatcaattgtcactgcaaaatcaatcatat 296  Q
    || ||||||||||||||||  | |||||||||||||    
T  29678665 taacactatcaattgtcaccaccaaatcaatcatat 29678630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 36911518 - 36911396
Alignment:
Q  174 ttatctggaaatggacggttggagttagggtggtgcttctccaccttatcttcatttgatgattcatcatcctaaaggaagaaatactaccactatcaat 273  Q
    |||||| ||| ||||| |||||||||||    |||||||||||||||||||||| |||||||||  || ||||||||| ||||| | || |||| | |||    
T  36911518 ttatctagaagtggacagttggagttagatcagtgcttctccaccttatcttcaattgatgatttgtcgtcctaaaggcagaaaaagtaacacttttaat 36911419  T
Q  274 tgtcactgcaaaatcaatcatat 296  Q
    ||||||||  |||||||||||||    
T  36911418 tgtcactgtgaaatcaatcatat 36911396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 36632092 - 36632038
Alignment:
Q  197 gttagggtggtgcttctccaccttatcttcatttgatgattcatcatcctaaagg 251  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  36632092 gttaggttggtgcttctccaccttatcttcatttgatgatttatcaccctaaagg 36632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 36641603 - 36641737
Alignment:
Q  151 aatatgagaa-tcttcactgcctgttatctggaaatggacggttggagttagggtggtgcttctccaccttatcttcatttgatgattcatcatcctaaa 249  Q
    |||||||||| |||||||||||  |||||| ||| ||||  || || |||||  ||||||||||||  ||||||||||  |||||||| |||||||||||    
T  36641603 aatatgagaactcttcactgcccattatctagaagtggagagtcggtgttagattggtgcttctccttcttatcttcagctgatgatttatcatcctaaa 36641702  T
Q  250 ggaagaaatactaccactatcaattgtcactgcaa 284  Q
    || ||||| | || |||| |||||| |||||||||    
T  36641703 ggcagaaaaaataacactgtcaattatcactgcaa 36641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 18361878 - 18361790
Alignment:
Q  208 gcttctccaccttatcttcatttgatgattcatcatcctaaaggaagaaatactaccactatcaattgtcactgcaaaatcaatcatat 296  Q
    ||||||| |||||||||||||| ||||||| ||||  |||||||| |||| | || ||||||||||||||| || ||||||||| ||||    
T  18361878 gcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatcaattgtcattgaaaaatcaattatat 18361790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 36601049 - 36601137
Alignment:
Q  208 gcttctccaccttatcttcatttgatgattcatcatcctaaaggaagaaatactaccactatcaattgtcactgcaaaatcaatcatat 296  Q
    ||||||| |||||||||||||| ||||||| ||||  |||||||| |||| | || ||||||||||||||| || ||||||||| ||||    
T  36601049 gcttctcaaccttatcttcattagatgatttatcacactaaaggatgaaaaagtaacactatcaattgtcattgaaaaatcaattatat 36601137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 35974443 - 35974269
Alignment:
Q  124 caaagaaggcattataacttgtaaagcaatatgagaa-tcttcactgcctgttatctggaaatggacggttggagttagggtggtgcttctccaccttat 222  Q
    |||||||| |||| |||||||||  | |||||||||| |||||||||||  |||||| ||| ||||  || || | |||| ||||||||| |||||||||    
T  35974443 caaagaagacattgtaacttgtag-gaaatatgagaactcttcactgcccattatctagaagtggagagtcggtgataggttggtgcttccccaccttat 35974345  T
Q  223 cttcatttgatgattcatcatcctaaaggaagaaatactaccactatcaattgtcactgcaaaatcaatcatatga 298  Q
    ||||||| ||||||| ||  ||||||||| ||| | | || || | ||| || | ||||||||||||||| |||||    
T  35974344 cttcattggatgatttattgtcctaaaggcagagaaagtaacaatgtcagttattactgcaaaatcaatcttatga 35974269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 36641427 - 36641482
Alignment:
Q  20 ctaaataagtatattacaatttggctttaaagttggagaccatcagctagataaag 75  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||    
T  36641427 ctaaataagtatattacaatttggctttaaaattggagactaccagttagataaag 36641482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 36634102 - 36634145
Alignment:
Q  16 atagctaaataagtatattacaatttggctttaaagttggagac 59  Q
    |||| |||||||||||||||||||||||||||||| ||||||||    
T  36634102 atagttaaataagtatattacaatttggctttaaaattggagac 36634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 35970226 - 35970174
Alignment:
Q  19 gctaaataagtatattacaatttggctttaaagttggagaccatcagctagat 71  Q
    ||||||||||||||| ||||| |||||| ||| |||||||| |||||||||||    
T  35970226 gctaaataagtatatcacaatatggcttcaaaattggagactatcagctagat 35970174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 36612092 - 36612131
Alignment:
Q  210 ttctccaccttatcttcatttgatgattcatcatcctaaa 249  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  36612092 ttctccaccttatcttcatttgatgatctatcatcctaaa 36612131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 19656685 - 19656774
Alignment:
Q  209 cttctccaccttatcttcatttgatgattcatcatcctaaaggaagaaatac-taccactatcaattgtcactgcaaaatcaatcatatga 298  Q
    ||||||||||||||||||||||||||||| |||||||||||  || ||| || || || |||||||||||||||  |||||| ||||||||    
T  19656685 cttctccaccttatcttcatttgatgatttatcatcctaaa-taacaaaaacataacattatcaattgtcactgtgaaatcattcatatga 19656774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 19673621 - 19673661
Alignment:
Q  209 cttctccaccttatcttcatttgatgattcatcatcctaaa 249  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  19673621 cttctccaccttatcttcattcgacgatttatcatcctaaa 19673661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University