View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_2 (Length: 635)

Name: NF21615_low_2
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_2
NF21615_low_2
[»] chr5 (3 HSPs)
chr5 (80-635)||(22073655-22074211)
chr5 (39-85)||(22076346-22076392)
chr5 (15-43)||(22073288-22073316)


Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 80 - 635
Target Start/End: Complemental strand, 22074211 - 22073655
Alignment:
Q  80 tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatgggaaaatgtcaaactatatctttttcacttccaaaagcgtg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  22074211 tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatggaaaaatgtcaaactatatcttttccccttccaaaagcgtg 22074112  T
Q  180 gttaacttcatttatagaacaacatnnnnnnnnctctctcatcacttttattaactaaatacaagttctaaaactaacatatgtcatggatcctcttcaa 279  Q
    ||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22074111 gttaacttcatttatagaaaaacataaaaaaaactctctcatcacttttattaactaaatacaagttctaaaactaacctatgtcatggatcctcttcaa 22074012  T
Q  280 cttaggcaacaagaacaacagtcaacttcaa-agagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactgatattaacacacgaactt 378  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||    
T  22074011 cttaggcaaaaagaacaacagtcaacttcaagaaagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactaacattaacacaccaattt 22073912  T
Q  379 ctaaagtcaaaccaaaactcaaagtcattaaacctattaatttgaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag 478  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22073911 ctaaagtcaaaccaaaactcaaagtcattaaacctattaattttaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag 22073812  T
Q  479 aattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttgatggaagcagaatccaa 578  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22073811 aattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttaatggaagcagaatccaa 22073712  T
Q  579 ccagaggtcgcggttctaagcagagaaaaaagaaatataattattcaaaataacaag 635  Q
    ||||||||||| ||||||||||||||||||||||| | |||| | ||||||||||||    
T  22073711 ccagaggtcgcagttctaagcagagaaaaaagaaaaagaattttgcaaaataacaag 22073655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 22076392 - 22076346
Alignment:
Q  39 ccactttctcctacattagccactctaccaaaagctaactgtccttt 85  Q
    ||||||||||||||||||||| |||||||||||  |||| |||||||    
T  22076392 ccactttctcctacattagcccctctaccaaaaattaacggtccttt 22076346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 22073288 - 22073316
Alignment:
Q  15 acaaatttgctgagaaggttgatcccact 43  Q
    |||||||||||||||||||||||||||||    
T  22073288 acaaatttgctgagaaggttgatcccact 22073316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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