View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21615_low_22 (Length: 293)
Name: NF21615_low_22
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_low_22 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 37402128 - 37401961
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402128 |
gatgaagaggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatccaattgagatgg |
37402029 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37402028 |
aggagaagtccacatcttcaaggagtcagtattagttgcaccaaatttagccaaccagtcagcacatt |
37401961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 38573009 - 38573176
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38573009 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaataccccagaggtatccgcaagcatgatgatatccaattgagatgg |
38573108 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38573109 |
aggagaagtccacatcttcaaggagtcagtattagttgcaccaaatttaatcaaccagtcagcacatt |
38573176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 53001935 - 53001784
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatc-----ccagaggtatccgcaagcatgatgatatccaattgag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
53001935 |
atgaagaggaaattaaaagacaagaaaaccaaactatccaatctgctgcctaaataccccagtccagaggtatccgcaagcatgatgatatccaattgag |
53001836 |
T |
|
| Q |
205 |
atggaggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattt |
256 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
53001835 |
gaggaggagaagtccacatcttcaaggagtcagtattagttgcactaaattt |
53001784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 44923397 - 44923230
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||||||| |||||||||| || ||||| |||| |||||||||||| || |
|
|
| T |
44923397 |
gatgaagatgaaattaaaagacaacaaaaataaactagccaatccgttgcctaaatattccagaggtattcgtaagcaggatgctatccaattgaggagg |
44923298 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||| | ||||||| ||||| ||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
44923297 |
aggagaagtccgcatcttcaaagagtcgatattagttgcaacaaatttagccaaccagttagcacatt |
44923230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 1259147 - 1259313
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1259147 |
atgaagaggaaattaaaagacaagaaaactaaactagccaatctgctgcataaataccccagaggtatccgcaagcatgatgatatccaattgagatgga |
1259246 |
T |
|
| Q |
210 |
ggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1259247 |
ggagaagtccacatcttcaaggagtcagtattagttgcaccaaatttagccaaccagtcagcacatt |
1259313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 277
Target Start/End: Original strand, 8291990 - 8292154
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgga |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||| || |||||||||| |||||| |||||||||||||||| ||| |
|
|
| T |
8291990 |
atgaagaggaaattaaaagacaggaaaaacaaactagccaatccgctgccaaaataccctagaggtatcctcaagcaggatgatatccaattga---gga |
8292086 |
T |
|
| Q |
210 |
ggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacattt |
277 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8292087 |
ggagaagtccacatcttcaaggattcggtattagctgcaccaaatttagccaaccagtcagcacattt |
8292154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 13799158 - 13798991
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13799158 |
gatgaagaggaaattaaaagacaagaaaaccaaactagccaatccgctgcctaaatacccaagaggtatccgcaagcatgatgatatccaattgaggagg |
13799059 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13799058 |
aggagaagtccacatcttcaaggagtctgtattagttgcaccaaatttagccaaccagtcagcacatt |
13798991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 109 - 276
Target Start/End: Complemental strand, 18096406 - 18096239
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18096406 |
gatgaagaggaaattaaaagacaagaaaatcaaactagccaattcgctgcccaaatactccagaggtatccgcaagcatgatgatatccaattgagatgg |
18096307 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
18096306 |
aggagaagtccacatcttcaaggagtcagtattagttgcaccaaatttagccaagcagtcagcacatt |
18096239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 37664666 - 37664813
Alignment:
| Q |
113 |
aagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatggagga |
212 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||||||||||||| ||| | ||||||||||| ||||| |||||| |
|
|
| T |
37664666 |
aagaggaaattaaaaga-aagaaaaacaaactagtcaatctgctgcctaaataccccagaggtatccgtaagtaagatgatatccatttgaggaggagga |
37664764 |
T |
|
| Q |
213 |
gaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgcca |
261 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
37664765 |
gaagtccacatcttcaaggagttgatattagttgcatcaaatttagcca |
37664813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 279
Target Start/End: Complemental strand, 13452535 - 13452372
Alignment:
| Q |
113 |
aagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatggagga |
212 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| | | |||||||| | ||| ||||||||||| | ||||| ||||||| |||||| |
|
|
| T |
13452535 |
aagaggaaattaaaagacgggaaaagcaaactagtcaatatgttacctaaatacctcag--gtatccgcaaggtggccgatatt-aattgaggaggagga |
13452439 |
T |
|
| Q |
213 |
gaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatttgt |
279 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
13452438 |
gaagtccacatcttcaaggagttggtattagttgtaccaaatttagccaaccagtcagcacatttgt |
13452372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 41813206 - 41813140
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggt |
175 |
Q |
| |
|
||||||||||||||||||||| |||| || |||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
41813206 |
gatgaagaggaaattaaaagataagataatcaaattagttaatccgttgcctaaatatcccagaggt |
41813140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 35822481 - 35822648
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35822481 |
gatgaagaggaaattaaaagacaagaaaaccaaactagccaattcgctgcctaaataccccagaggtatccgcaagcatgatgatatccaattgaggagg |
35822580 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
35822581 |
aggagaagtccacatcttcaaggattcagtattagttgcaccaaatttagcaaaccagtcagcgcatt |
35822648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 23965412 - 23965574
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||| ||| |
|
|
| T |
23965412 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatattccagaggtatctgcaaatatgatgatattcaattgaggagga |
23965511 |
T |
|
| Q |
210 |
ggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagca |
272 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||| |
|
|
| T |
23965512 |
ggagaaatccacatcttcaaggagtcggtattagttgcatcaaatttatcaaaccagtcagca |
23965574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 110 - 279
Target Start/End: Complemental strand, 33510106 - 33509940
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgga |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| | ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
33510106 |
atgacgaggaaattaaaagacaagaaaatcaaactggccaatccgttgcctaaacatcccagaggtatccgcaagcatggtgatatccaattga---gga |
33510010 |
T |
|
| Q |
210 |
ggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatttgt |
279 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
33510009 |
ggagaagttcacatcttcaaggagtcggtattagttgcaccaaatttagtcaaccagtcagcatatttgt |
33509940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 40698280 - 40698447
Alignment:
| Q |
109 |
gatgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
40698280 |
gatgaagaggaaattaaaagacaagaaaatcaaactacccaatccgctgcctaaataccccagaggtattcgcaagcatgatgatatccaattgaggagg |
40698379 |
T |
|
| Q |
209 |
aggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40698380 |
agtagaagtccacatcttcaaggagtcagtattagttgcaccaaatttagccaaccagtcagcacatt |
40698447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 23236484 - 23236601
Alignment:
| Q |
159 |
ctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatggaggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttg |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| | ||||| ||||||||| |||| |||||||||| ||| ||| | |||| ||| || | |
|
|
| T |
23236484 |
ctaaatatcccagaggcatccgcaagcagagagatatttagttgaggtggaggagacatccatatcttcaaggaatcaacatttttagcacaaaacttgg |
23236583 |
T |
|
| Q |
259 |
ccaaccagtcagcacatt |
276 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23236584 |
ccaaccagtcagcacatt |
23236601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 7919 - 8074
Alignment:
| Q |
110 |
atgaagaggaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatgga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7919 |
atgaagaggaaattaaaagacaagaaaatcaaactag-----------cctaaataccctagaggtatccgcaagcatgatgatatccaattgaggagga |
8007 |
T |
|
| Q |
210 |
ggagaagtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
8008 |
ggagaagtccacatcttcaaggagtcagtattagttgcaccaaatttagccatccagtcggcacatt |
8074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 15667352 - 15667510
Alignment:
| Q |
118 |
gaaattaaaagacaagaaaaccaaactagtcaatccgctgcctaaatatcccagaggtatccgcaagcatgatgatatccaattgagatggaggagaagt |
217 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||| || ||||||||| | |
|
|
| T |
15667352 |
gaaattaaaagacaaaaaaaacaaactagtcaattcgctgcctaaatacatcagaggtatccgcaagcaggatgatattcaattaaggaggaggagaaat |
15667451 |
T |
|
| Q |
218 |
ccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
|||| |||| || ||||| |||||||||||||| ||| ||||| |||||| |||||| |
|
|
| T |
15667452 |
ccacatctttaaagagtcgatattagttgcaccatattaagccaatcagtcaacacatt |
15667510 |
T |
|
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Target: scaffold0076 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 2167 - 2107
Alignment:
| Q |
216 |
gtccacgtcttcaaggagtcagtattagttgcaccaaattttgccaaccagtcagcacatt |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2167 |
gtccacatcttcaaggagtcagtattagttgcaccaaatttagccaaccagtcagcacatt |
2107 |
T |
|
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