View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_24 (Length: 280)

Name: NF21615_low_24
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_24
NF21615_low_24
[»] chr3 (18 HSPs)
chr3 (3-272)||(11772587-11772856)
chr3 (197-272)||(11778555-11778630)
chr3 (3-72)||(11778628-11778697)
chr3 (147-226)||(9853337-9853417)
chr3 (147-234)||(9842392-9842480)
chr3 (109-173)||(10264627-10264691)
chr3 (132-178)||(10130843-10130889)
chr3 (132-178)||(10372126-10372172)
chr3 (135-192)||(10093190-10093247)
chr3 (135-192)||(10200072-10200129)
chr3 (20-88)||(10532589-10532657)
chr3 (155-193)||(10130689-10130727)
chr3 (155-193)||(10372288-10372326)
chr3 (135-168)||(10134711-10134744)
chr3 (190-265)||(10093259-10093335)
chr3 (190-265)||(10200141-10200217)
chr3 (41-77)||(10360125-10360161)
chr3 (20-88)||(10681400-10681468)
[»] chr4 (1 HSPs)
chr4 (138-192)||(17848916-17848970)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 11772587 - 11772856
Alignment:
Q  3 atagttgtcattgatatccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatgcatctttgtatgtttccttcctaat 102  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772587 atagttgcaattgatagccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatgcatctttgtatgtttccttcctaat 11772686  T
Q  103 aacctgctgcatgatcccgttagacaaggtagaatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgatactgtttcaa 202  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772687 aacctgctgcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgatactgtttcaa 11772786  T
Q  203 attttctgtttcactgctttgttagcatgtgcgatataaagcatagataaacggaacaagtagtataatc 272  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11772787 attttctgtttcactgctttgttagcatgtgtaatataaagcatagataaacggaacaagtagtataatc 11772856  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 11778630 - 11778555
Alignment:
Q  197 tttcaaattttctgtttcactgctttgttagcatgtgcgatataaagcatagataaacggaacaagtagtataatc 272  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11778630 tttcaaattttctgtttcactgctttgttagcatgtgtaatataaagcatagataaacggaacaagtagtataatc 11778555  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 11778697 - 11778628
Alignment:
Q  3 atagttgtcattgatatccacaagattgtatttacttggctaatattcagtttgcattttattatcattt 72  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11778697 atagttgcaattgatagccacaagattgtatttacttggctaatattcagtttgcattttattatcattt 11778628  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 9853337 - 9853417
Alignment:
Q  147 tttgtaatattcttaatttgtagctttaag-tgaatgttcatatgatactgtttcaaattttctgtttcactgctttgtta 226  Q
    ||||||||||||||||||||| |||||||  |||||| | |||||||||||||| |||| ||||||| || ||||||||||    
T  9853337 tttgtaatattcttaatttgttgctttaaactgaatgctaatatgatactgtttgaaatcttctgttccattgctttgtta 9853417  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 9842392 - 9842480
Alignment:
Q  147 tttgtaatattcttaatttgtagcttt-aagtgaatgttcatatgatactgtttcaaattttctgtttcactgctttgttagcatgtgc 234  Q
    ||||||||||||||||||||| ||||| || | |||| | |||||||||||||| |||| ||||||| |  |||||||||| |||||||    
T  9842392 tttgtaatattcttaatttgttgctttaaactaaatgctaatatgatactgtttgaaatcttctgttccgttgctttgttatcatgtgc 9842480  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 10264627 - 10264691
Alignment:
Q  109 ctgcatgatcccgttagacaaggtagaatgcagtaggatttgtaatattcttaatttgtagcttt 173  Q
    |||||||||||  | |||||| ||| |||| ||||||||||||||||||||||||||||| ||||    
T  10264627 ctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaacttt 10264691  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 10130843 - 10130889
Alignment:
Q  132 tagaatgcagtaggatttgtaatattcttaatttgtagctttaagtg 178  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  10130843 tagaatgcggtagggtttgtaatattcttaatttgtagcttttagtg 10130889  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 10372172 - 10372126
Alignment:
Q  132 tagaatgcagtaggatttgtaatattcttaatttgtagctttaagtg 178  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  10372172 tagaatgcggtagggtttgtaatattcttaatttgtagcttttagtg 10372126  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 10093190 - 10093247
Alignment:
Q  135 aatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 192  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  |||| |||||||||    
T  10093190 aatgcagtagggtttgtaatattcttgctttgtagctttaagcaaatgctcatatgat 10093247  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 10200072 - 10200129
Alignment:
Q  135 aatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 192  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  |||| |||||||||    
T  10200072 aatgcagtagggtttgtaatattcttgctttgtagctttaagcaaatgctcatatgat 10200129  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 10532589 - 10532657
Alignment:
Q  20 ccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatgcatctttgtat 88  Q
    ||||||||||| ||||| ||  | ||| ||||||||| ||||| |||||||||| ||||||||||||||    
T  10532589 ccacaagattggatttaattaaccaattttcagtttgtattttcttatcatttgtatgcatctttgtat 10532657  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 10130689 - 10130727
Alignment:
Q  155 attcttaatttgtagctttaagtgaatgttcatatgata 193  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  10130689 attcttaatttgtaactttaagtgaatgctcatatgata 10130727  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 10372326 - 10372288
Alignment:
Q  155 attcttaatttgtagctttaagtgaatgttcatatgata 193  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  10372326 attcttaatttgtaactttaagtgaatgctcatatgata 10372288  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 10134711 - 10134744
Alignment:
Q  135 aatgcagtaggatttgtaatattcttaatttgta 168  Q
    ||||||||||| ||||||||||||||||||||||    
T  10134711 aatgcagtagggtttgtaatattcttaatttgta 10134744  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 10093259 - 10093335
Alignment:
Q  190 gatactgtttcaaattttctgtttcactgctttgttagcatgtgcgat-ataaagcatagataaacggaacaagtag 265  Q
    |||||||||| |||| ||||||| |||||||||||||| |||||  |  || ||||||| ||||| |||||||||||    
T  10093259 gatactgtttgaaatattctgttccactgctttgttagtatgtggaaacatgaagcataaataaatggaacaagtag 10093335  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 10200141 - 10200217
Alignment:
Q  190 gatactgtttcaaattttctgtttcactgctttgttagcatgtgcgat-ataaagcatagataaacggaacaagtag 265  Q
    |||||||||| |||| ||||||| |||||||||||||| |||||  |  || ||||||| ||||| |||||||||||    
T  10200141 gatactgtttgaaatattctgttccactgctttgttagtatgtggaaacatgaagcataaataaatggaacaagtag 10200217  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 10360161 - 10360125
Alignment:
Q  41 gctaatattcagtttgcattttattatcatttgaatg 77  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  10360161 gctaatagtcagtttgtattttattatcatttgaatg 10360125  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 10681400 - 10681468
Alignment:
Q  20 ccacaagattgtatttacttggctaatattcagtttgcattttattatcatttgaatgcatctttgtat 88  Q
    ||||||||||| ||||| ||  | ||| ||||||||| ||||| | |||||||| ||||||||||||||    
T  10681400 ccacaagattggatttaattaaccaattttcagtttgtattttctgatcatttgcatgcatctttgtat 10681468  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 17848970 - 17848916
Alignment:
Q  138 gcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 192  Q
    |||||| | ||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  17848970 gcagtaagctttgtaatattctgaatttgtagctgtaaatgaatgttcatatgat 17848916  T

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