View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_25 (Length: 279)

Name: NF21615_low_25
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_25
NF21615_low_25
[»] chr3 (10 HSPs)
chr3 (1-263)||(23688965-23689227)
chr3 (1-263)||(24061202-24061464)
chr3 (13-91)||(23692491-23692569)
chr3 (13-91)||(23710931-23711009)
chr3 (13-91)||(23729387-23729465)
chr3 (13-91)||(23747842-23747920)
chr3 (190-242)||(23692624-23692676)
chr3 (190-242)||(23711064-23711116)
chr3 (190-242)||(23729520-23729572)
chr3 (190-242)||(23747975-23748027)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 23688965 - 23689227
Alignment:
Q  1 aaaaataaaatatagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggtcaaatagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23688965 aaaaataaaatatagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggtcaaatagta 23689064  T
Q  101 taaatagcttacgataacattctttcagaaagaaatcaaaaccctacgatacacaaccctaatacacattctttcttctcttcctccattctcgttattt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23689065 taaaaagcttacgataacattctttcagaaagaaatcaaaaccctacgatacacaaccctaatacacattctttcttctcttcctccattctcgttattt 23689164  T
Q  201 ctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttc 263  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  23689165 ctccctactaccactgtcccttttctctatcgtttttgcttcccactgcaactctcttgtttc 23689227  T

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Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 24061202 - 24061464
Alignment:
Q  1 aaaaataaaatatagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggtcaaatagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24061202 aaaaataaaatatagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggtcaaatagta 24061301  T
Q  101 taaatagcttacgataacattctttcagaaagaaatcaaaaccctacgatacacaaccctaatacacattctttcttctcttcctccattctcgttattt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24061302 taaaaagcttacgataacattctttcagaaagaaatcaaaaccctacgatacacaaccctaatacacattctttcttctcttcctccattctcgttattt 24061401  T
Q  201 ctccctactaccactgtcgcttttctctatcgtttttgcttcctactgcaactctcttgtttc 263  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24061402 ctccctactaccactgtcccttttctctatcgtttttgcttcccactgcaactctcttgtttc 24061464  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 23692491 - 23692569
Alignment:
Q  13 tagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggt 91  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||    
T  23692491 tagatgcttctaagaaatttcatacgaccgacttggtgaaattatattttgagatataacagcttcacttgaattaggt 23692569  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 23710931 - 23711009
Alignment:
Q  13 tagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggt 91  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||    
T  23710931 tagatgcttctaagaaatttcatacgaccgacttggtgaaattatattttgagatataacagcttcacttgaattaggt 23711009  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 23729387 - 23729465
Alignment:
Q  13 tagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggt 91  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||    
T  23729387 tagatgcttctaagaaatttcatacgaccgacttggtgaaattatattttgagatataacagcttcacttgaattaggt 23729465  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 23747842 - 23747920
Alignment:
Q  13 tagatccttctaagaaatttcatacgaccgacttagtgaaattttattttgagatatatcggtttcacttgaattaggt 91  Q
    ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||    
T  23747842 tagatgcttctaagaaatttcatacgaccgacttggtgaaattatattttgagatataacagcttcacttgaattaggt 23747920  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 23692624 - 23692676
Alignment:
Q  190 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttc 242  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||    
T  23692624 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttc 23692676  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 23711064 - 23711116
Alignment:
Q  190 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttc 242  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||    
T  23711064 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttc 23711116  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 23729520 - 23729572
Alignment:
Q  190 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttc 242  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||    
T  23729520 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttc 23729572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 23747975 - 23748027
Alignment:
Q  190 tctcgttatttctccctactaccactgtcgcttttctctatcgtttttgcttc 242  Q
    ||||||| |||||||| |||| |||| || |||||||||||||||| ||||||    
T  23747975 tctcgttttttctcccaactatcactctcccttttctctatcgtttctgcttc 23748027  T

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