View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_27 (Length: 251)

Name: NF21615_low_27
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_27
NF21615_low_27
[»] chr3 (3 HSPs)
chr3 (151-232)||(20594472-20594553)
chr3 (1-58)||(20594322-20594379)
chr3 (1-45)||(20599383-20599427)
[»] chr6 (4 HSPs)
chr6 (151-232)||(8695431-8695512)
chr6 (1-58)||(8695278-8695335)
chr6 (1-45)||(8700624-8700668)
chr6 (2-45)||(9390937-9390980)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 20594472 - 20594553
Alignment:
Q  151 attcaaaccgggttttgcaaggaacgattcatcatcatcaccatggattcatcagaagatgaaggggaagttgcgatgcacc 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20594472 attcaaaccggattttgcaaggaacgattcatcatcatcaccatggattcatcagacgatgaaggggaagttgcgatgcacc 20594553  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20594322 - 20594379
Alignment:
Q  1 cgtggcgcagccagattggcagccaacgtggcacgtatataaagggtttgtctttggg 58  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20594322 cgtggcgcagccagattggcagccaatgtggcacgtatataaagggtttgtctttggg 20594379  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20599427 - 20599383
Alignment:
Q  1 cgtggcgcagccagattggcagccaacgtggcacgtatataaagg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20599427 cgtggcgcagccagattggcagccaacgtggcacgtatataaagg 20599383  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 8695431 - 8695512
Alignment:
Q  151 attcaaaccgggttttgcaaggaacgattcatcatcatcaccatggattcatcagaagatgaaggggaagttgcgatgcacc 232  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  8695431 attcaaaccggattttgcaaggaacgattcatgatcatcaccatggattcatcagacgatgaaggggaagctgcgatgcacc 8695512  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8695278 - 8695335
Alignment:
Q  1 cgtggcgcagccagattggcagccaacgtggcacgtatataaagggtttgtctttggg 58  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8695278 cgtggcgcagccagattggcagccagcgtggcacgtatataaagggtttgtctttggg 8695335  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8700668 - 8700624
Alignment:
Q  1 cgtggcgcagccagattggcagccaacgtggcacgtatataaagg 45  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  8700668 cgtggcgcagccagattggcagccagcgtggcacgtatataaagg 8700624  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 9390937 - 9390980
Alignment:
Q  2 gtggcgcagccagattggcagccaacgtggcacgtatataaagg 45  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  9390937 gtggcgcagccagattggcgtccaacgtggcacgtatataaagg 9390980  T

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