View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21615_low_33 (Length: 208)

Name: NF21615_low_33
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21615_low_33
NF21615_low_33
[»] chr5 (1 HSPs)
chr5 (16-188)||(41288487-41288654)
[»] chr4 (1 HSPs)
chr4 (21-67)||(23406633-23406679)
[»] chr7 (1 HSPs)
chr7 (22-67)||(29346834-29346879)
[»] chr8 (3 HSPs)
chr8 (19-73)||(17011631-17011685)
chr8 (19-73)||(17545516-17545570)
chr8 (19-112)||(36316002-36316100)
[»] chr2 (1 HSPs)
chr2 (16-49)||(19261773-19261806)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 41288654 - 41288487
Alignment:
Q  16 aagggtatgaagaaaaatgatgaaagtctctcctttctttcttaggtactctatagtaatgatttagtcctagagcttaatcttcttctatcttttcctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41288654 aagggtatgaagaaaaatgatgaaagtctctcctttctttcttaagtactctatagtaatgatttagtcctagagcttaatcttcttctatcttttcctt 41288555  T
Q  116 tctcttcaatgtaatgtaacaagaacactaaatctaattgatctttgactttcgatttgatctttgacttaat 188  Q
    |||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41288554 tctcttcaatgtaat-----aagaacactaaatctaattgatctttgactttcgatttgatctttgacttaat 41288487  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 23406633 - 23406679
Alignment:
Q  21 tatgaagaaaaatgatgaaagtctctcctttctttcttaggtactct 67  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  23406633 tatgaagaaaaatgatgaaagtctctcctctctctctttggtactct 23406679  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 29346879 - 29346834
Alignment:
Q  22 atgaagaaaaatgatgaaagtctctcctttctttcttaggtactct 67  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||    
T  29346879 atgaagaaaaatgatgaaagtctctcctttctccctttggtactct 29346834  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 17011685 - 17011631
Alignment:
Q  19 ggtatgaagaaaaatgatgaaagtctctcctttctttcttaggtactctatagta 73  Q
    ||||||||||||||||||| ||||||||||| |||  ||| |||||||| |||||    
T  17011685 ggtatgaagaaaaatgatgcaagtctctcctctctccctttggtactctctagta 17011631  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 17545516 - 17545570
Alignment:
Q  19 ggtatgaagaaaaatgatgaaagtctctcctttctttcttaggtactctatagta 73  Q
    ||||||||||||||||||| ||||||||||| |||  ||| |||||||| |||||    
T  17545516 ggtatgaagaaaaatgatgcaagtctctcctctctccctttggtactctctagta 17545570  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 36316100 - 36316002
Alignment:
Q  19 ggtatgaagaaaaatgatgaaagtctctcctttctttcttaggtactc-----tatagtaatgatttagtcctagagcttaatcttcttctatcttttc 112  Q
    |||| ||||||||||||||||| |||||||| |||  ||| | |||||     || ||||||||||||||| |||  |||||||||||||||| |||||    
T  36316100 ggtaggaagaaaaatgatgaaaatctctcctctctccctttgatactctctagtagagtaatgatttagtcttaggacttaatcttcttctatgttttc 36316002  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 19261806 - 19261773
Alignment:
Q  16 aagggtatgaagaaaaatgatgaaagtctctcct 49  Q
    ||||||||||||||||||||||||||||| ||||    
T  19261806 aagggtatgaagaaaaatgatgaaagtctatcct 19261773  T

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