View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21615_low_5 (Length: 582)
Name: NF21615_low_5
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 10 - 563
Target Start/End: Complemental strand, 54479593 - 54479041
Alignment:
| Q |
10 |
agtagcaaagggtctgggatgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479593 |
agtatcaaagggtctgggatgatcaagttgtttgca-gagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtg |
54479495 |
T |
|
| Q |
110 |
tttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479494 |
tttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattacc |
54479395 |
T |
|
| Q |
210 |
ggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcctgttttcgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479394 |
ggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcctgttttcgg |
54479295 |
T |
|
| Q |
310 |
taacaaacttcaatatttcaggaaccttttctctcaaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggtgatattaac |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54479294 |
taacaaacttcaatatttcaggaaccttttctctcaaatgaaaagacatttggaacttttctttgcatttcttgcacggaacagctccggtgatattaac |
54479195 |
T |
|
| Q |
410 |
tattctattttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttccatctcgag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479194 |
tattctattttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttccatctcgag |
54479095 |
T |
|
| Q |
510 |
ttacttcaaagccattcatgatttctctgaagggatccatcgatgtgttgaaag |
563 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54479094 |
ttacttcaaagccattcatgatatctctgaagggatccatcgatgtgttgaaag |
54479041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 25044311 - 25044551
Alignment:
| Q |
30 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
129 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||| | ||||| ||| | | ||||| |||||||||| | |
|
|
| T |
25044311 |
gatcaagttgtttgcat-agttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaatt |
25044409 |
T |
|
| Q |
130 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttg |
229 |
Q |
| |
|
||||| | |||| || || ||||||||||| || | |||||||| ||| |||||| || ||||| || ||||||| ||||||||||||||||| || |
|
|
| T |
25044410 |
gtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgttttcttt |
25044509 |
T |
|
| Q |
230 |
attacagtgcacacaattaggcaatgttggcttcatccaaat |
271 |
Q |
| |
|
|| || |||||||| | |||||| |||| |||||| |||| |
|
|
| T |
25044510 |
gttgcaatgcacacatcttggcaatcttggattcatcaaaat |
25044551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 293
Target Start/End: Original strand, 25040598 - 25040835
Alignment:
| Q |
56 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | ||||| | ||| ||||| |||||||||| |||| | || |||| || |||| ||| |
|
|
| T |
25040598 |
ataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatt |
25040697 |
T |
|
| Q |
156 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagtgcacacaattaggcaatg |
255 |
Q |
| |
|
||||| | |||||||||| ||| |||||| || |||||| |||||||| ||||| || ||||| |||| |||||| || |||| ||| || |||||| |
|
|
| T |
25040698 |
tgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttggcaatt |
25040797 |
T |
|
| Q |
256 |
ttggcttcatccaaatggttggcgccctgtcatgcatg |
293 |
Q |
| |
|
|||| |||||| |||| ||| ||||| ||||||||| |
|
|
| T |
25040798 |
ttggattcatcaaaatttgtggtgccctatcatgcatg |
25040835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 25040886 - 25040971
Alignment:
| Q |
344 |
caaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggtgatattaactattctattttgcaagagat |
429 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||| |||||| | |||||||| |||| ||||| ||||| ||||||| |
|
|
| T |
25040886 |
caaatcaaaagacatttggaactttgttttgcaactattgcattgaacatcgccggtgatgttaaagattctgttttgtaagagat |
25040971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 10124187 - 10124400
Alignment:
| Q |
30 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
129 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| | | ||||| | | | ||||| ||||| |||| | |
|
|
| T |
10124187 |
gatcaagttgtttgcaa-agttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt |
10124285 |
T |
|
| Q |
130 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttg |
229 |
Q |
| |
|
||| | || | || || |||||||||||||||| |||||||||| ||| |||||| || |||||| |||||||||||||| ||||||| ||||| ||| |
|
|
| T |
10124286 |
gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttg |
10124385 |
T |
|
| Q |
230 |
attacagtgcacaca |
244 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
10124386 |
attgcaatgcacaca |
10124400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 28649786 - 28649982
Alignment:
| Q |
28 |
atgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattctt-ggcacctgattcatgattcttggtgtgtttgcagaaatacttca |
126 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||||||||||||| || |||| || | ||||| ||| | | ||||| |||||||||| |
|
|
| T |
28649786 |
atgatcaagttatttgcat-agttcaagataagttaaataaagaactctattttttggcat-tgttctatgatggttgttatacttgcaaaaatacttca |
28649883 |
T |
|
| Q |
127 |
gctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgtttt |
225 |
Q |
| |
|
|||||| | |||| || |||||||||||||| || |||| ||||| ||| || ||| || |||||| |||||||||| |||||||||| |||||| |
|
|
| T |
28649884 |
attgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgtttt |
28649982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 21393244 - 21393068
Alignment:
| Q |
56 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | ||||| ||| ||| ||||| |||||||||| |||| | || |||| || || |||||| |
|
|
| T |
21393244 |
ataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
|
| Q |
156 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgatt |
232 |
Q |
| |
|
||||| | || ||||||| ||| |||||| || |||||| || ||||||||||| ||||||||||||| |||||| |
|
|
| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgatt |
21393068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 1975173 - 1975327
Alignment:
| Q |
138 |
gtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagt |
237 |
Q |
| |
|
||||| || |||||||||||||| | |||| ||||| ||| ||||||||| |||||| | ||||||||| || |||||||| |||| |||||| || | |
|
|
| T |
1975173 |
gtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaat |
1975272 |
T |
|
| Q |
238 |
gcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcat |
292 |
Q |
| |
|
| ||||| ||||||||| |||| | ||| ||||| ||||| ||||| ||| |||| |
|
|
| T |
1975273 |
gtacacatttaggcaatattggatgcattcaaattgttggtgccctatcacgcat |
1975327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University