View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21615_low_9 (Length: 496)
Name: NF21615_low_9
Description: NF21615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21615_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Original strand, 42326697 - 42327176
Alignment:
| Q |
6 |
aatcactaggagaattaatttaaacaaaatatgaacatgaatcccaataaacgagtaattacaaataccaattctaacaagtcataatttattaaaacaa |
105 |
Q |
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| T |
42326697 |
aatcactaggagaattaatttaaacaaaatatgaacatgaatcccaataaacgagtaattacaaataccaattctaacaagtcataatttattaaaacaa |
42326796 |
T |
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| Q |
106 |
aaaacaaactcctccatgcatgaacaacgaaaataagaagagaacaatactgaactagaacaatggcggtggcgcataacccaagaacggcct------t |
199 |
Q |
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| T |
42326797 |
aaaacaaactcgtccatgcatgaacaacgaaaataagaagagaacaatactgaactagaacaatggcggtggcgcataacccaagaacggccttcctcct |
42326896 |
T |
|
| Q |
200 |
cctcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatca |
299 |
Q |
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| T |
42326897 |
cctcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatca |
42326996 |
T |
|
| Q |
300 |
caaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaatannnnnnnncc |
399 |
Q |
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| T |
42326997 |
caaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaata-attttttcc |
42327095 |
T |
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| Q |
400 |
tcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaagttaacgttggtg |
480 |
Q |
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| T |
42327096 |
tcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaaggtaacgttggtg |
42327176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 148 - 367
Target Start/End: Original strand, 42319458 - 42319674
Alignment:
| Q |
148 |
aacaatactgaactagaacaatggcggtggcgcataacccaagaacggccttcctcctcctccgtaagattcagagtaatggacggtatctttgaccttg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||||||| ||| |
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| T |
42319458 |
aacaatactgaactagaacaatggcggtggcgcataacccaagaacggccttcctccgcc---gtaagaatcagagtaatgaacggtgtctttgactttg |
42319554 |
T |
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| Q |
248 |
tggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacactttgcccggacaac |
347 |
Q |
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| T |
42319555 |
tggaaaccattcttgaatactccgaatccaaacagaattccgatcgtgatcacaaccacaatcaagcatatgcataacgtgcagattttgcctggacaac |
42319654 |
T |
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| Q |
348 |
acatctttaatcaacgatcg |
367 |
Q |
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|||||| ||| |||||||| |
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| T |
42319655 |
acatctcgaatgaacgatcg |
42319674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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