View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21616_high_1 (Length: 843)

Name: NF21616_high_1
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21616_high_1
NF21616_high_1
[»] chr4 (21 HSPs)
chr4 (444-830)||(12888485-12888868)
chr4 (294-395)||(12888919-12889023)
chr4 (166-273)||(12889058-12889165)
chr4 (28-80)||(21064916-21064968)
chr4 (28-78)||(50768017-50768067)
chr4 (688-770)||(46879468-46879551)
chr4 (89-143)||(12889207-12889261)
chr4 (28-78)||(14261199-14261249)
chr4 (28-78)||(20249086-20249136)
chr4 (28-78)||(21310576-21310626)
chr4 (28-78)||(22321340-22321390)
chr4 (28-78)||(24706319-24706369)
chr4 (28-78)||(40122559-40122609)
chr4 (28-78)||(44568992-44569042)
chr4 (28-78)||(12071715-12071765)
chr4 (28-78)||(21661607-21661657)
chr4 (28-78)||(21670371-21670421)
chr4 (28-78)||(25704806-25704856)
chr4 (28-78)||(6129021-6129071)
chr4 (28-78)||(34324655-34324705)
chr4 (28-73)||(20714426-20714471)
[»] chr2 (12 HSPs)
chr2 (328-830)||(36593140-36593646)
chr2 (166-273)||(36594234-36594341)
chr2 (28-78)||(22388210-22388260)
chr2 (28-78)||(37673815-37673865)
chr2 (28-78)||(1102656-1102706)
chr2 (28-78)||(3519062-3519112)
chr2 (28-78)||(12969812-12969862)
chr2 (28-78)||(23366944-23366994)
chr2 (28-74)||(39938325-39938371)
chr2 (36-80)||(39561960-39562004)
chr2 (28-78)||(1646442-1646492)
chr2 (28-78)||(28110167-28110217)
[»] chr8 (20 HSPs)
chr8 (275-830)||(38148787-38149348)
chr8 (478-830)||(20519239-20519589)
chr8 (478-830)||(32918993-32919341)
chr8 (166-260)||(20519782-20519876)
chr8 (166-273)||(38148646-38148753)
chr8 (28-78)||(20546365-20546415)
chr8 (28-78)||(27035150-27035200)
chr8 (28-78)||(2540002-2540052)
chr8 (28-78)||(7147068-7147118)
chr8 (28-78)||(11174295-11174345)
chr8 (28-78)||(30999596-30999646)
chr8 (28-78)||(37345726-37345776)
chr8 (28-78)||(40058375-40058425)
chr8 (28-78)||(40918803-40918853)
chr8 (28-78)||(3585606-3585656)
chr8 (28-78)||(11646397-11646447)
chr8 (36-78)||(27563939-27563981)
chr8 (28-78)||(36068235-36068285)
chr8 (28-78)||(43275471-43275521)
chr8 (283-355)||(20519652-20519727)
[»] chr3 (16 HSPs)
chr3 (478-830)||(49358794-49359146)
chr3 (167-228)||(49359192-49359253)
chr3 (28-78)||(48963274-48963324)
chr3 (28-78)||(13364998-13365048)
chr3 (28-78)||(23088003-23088053)
chr3 (28-78)||(31873935-31873984)
chr3 (28-78)||(36881435-36881485)
chr3 (28-78)||(46694182-46694232)
chr3 (28-78)||(199010-199060)
chr3 (28-78)||(3383231-3383281)
chr3 (28-78)||(13703367-13703417)
chr3 (28-78)||(29375287-29375337)
chr3 (28-78)||(43750291-43750341)
chr3 (37-78)||(19241740-19241781)
chr3 (30-78)||(32835061-32835109)
chr3 (41-78)||(48820508-48820545)
[»] chr6 (16 HSPs)
chr6 (476-826)||(22696786-22697133)
chr6 (528-732)||(34501223-34501420)
chr6 (735-830)||(34502715-34502810)
chr6 (295-415)||(22697206-22697330)
chr6 (179-273)||(22703528-22703621)
chr6 (28-78)||(8626637-8626687)
chr6 (28-78)||(13757362-13757412)
chr6 (28-78)||(17942598-17942648)
chr6 (28-78)||(29260347-29260397)
chr6 (28-80)||(1605733-1605785)
chr6 (28-78)||(8235780-8235830)
chr6 (28-78)||(15064767-15064817)
chr6 (28-78)||(31559810-31559860)
chr6 (28-80)||(30734553-30734605)
chr6 (28-78)||(4129582-4129631)
chr6 (28-77)||(847849-847898)
[»] chr7 (16 HSPs)
chr7 (444-829)||(36934480-36934865)
chr7 (466-694)||(5888702-5888932)
chr7 (320-453)||(5888520-5888654)
chr7 (283-453)||(36934886-36935060)
chr7 (690-806)||(5892651-5892769)
chr7 (180-273)||(5888351-5888444)
chr7 (28-78)||(10981663-10981713)
chr7 (28-78)||(25614425-25614475)
chr7 (28-78)||(36453196-36453246)
chr7 (28-78)||(47110605-47110655)
chr7 (28-78)||(27813966-27814016)
chr7 (129-161)||(5888309-5888341)
chr7 (28-78)||(3091668-3091718)
chr7 (36-78)||(27941056-27941098)
chr7 (28-78)||(40349117-40349167)
chr7 (208-273)||(36935096-36935161)
[»] chr5 (20 HSPs)
chr5 (536-729)||(27631784-27631977)
chr5 (283-453)||(36607195-36607370)
chr5 (283-453)||(27631500-27631673)
chr5 (171-273)||(36607057-36607159)
chr5 (709-830)||(36607593-36607717)
chr5 (164-227)||(27631410-27631473)
chr5 (28-78)||(12806925-12806975)
chr5 (28-78)||(23097796-23097846)
chr5 (28-78)||(25683301-25683351)
chr5 (28-78)||(25773804-25773854)
chr5 (28-78)||(37900695-37900745)
chr5 (28-78)||(40886682-40886732)
chr5 (444-548)||(36607401-36607501)
chr5 (40-78)||(10285130-10285168)
chr5 (28-78)||(30720564-30720614)
chr5 (28-78)||(36561171-36561221)
chr5 (37-78)||(16983421-16983462)
chr5 (36-80)||(7277493-7277537)
chr5 (748-797)||(27631967-27632018)
chr5 (28-78)||(16054266-16054316)
[»] chr1 (13 HSPs)
chr1 (686-829)||(32946613-32946756)
chr1 (28-78)||(23526394-23526444)
chr1 (28-78)||(321781-321831)
chr1 (28-78)||(23045351-23045401)
chr1 (28-78)||(27211027-27211077)
chr1 (28-78)||(40783729-40783779)
chr1 (28-78)||(47037924-47037974)
chr1 (28-80)||(33082899-33082951)
chr1 (28-78)||(31061531-31061581)
chr1 (28-78)||(40261357-40261407)
chr1 (28-78)||(284488-284538)
chr1 (40-78)||(40562358-40562396)
chr1 (28-78)||(46771793-46771843)
[»] scaffold0062 (1 HSPs)
scaffold0062 (28-80)||(337-389)
[»] scaffold0025 (1 HSPs)
scaffold0025 (28-80)||(65235-65287)
[»] scaffold1770 (1 HSPs)
scaffold1770 (28-78)||(317-366)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-151; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 444 - 830
Target Start/End: Complemental strand, 12888868 - 12888485
Alignment:
Q  444 gtggtggtggatgcgaatccggatctgaatccgtaaccatatccggatctggattgcgttgttttttgaattggtaaccaagggagatgtttcggttggt 543  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||    
T  12888868 gtggtggtggatgcaaatccggatctgaatccgcaaccatatccggatctggattatgttattttttgaattggtaatcaagggagatgtttcggttggt 12888769  T
Q  544 gatgttggagtgggggtgttgttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaa 643  Q
    ||||||| ||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||| || |||||||||    
T  12888768 gatgttgtagtggtgttgttgttaatgtgctgctgtttttggtgaagtttcaaatggaggtgatgcagggagtggtgttgctgtcttaggtgatgtccaa 12888669  T
Q  644 gtggtggtgatgcagtttgcatgtggtgatctcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaag 743  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |    
T  12888668 gtggtggtgatgcagtctgcgtgtggtgatctcaaatctaaggtcatggtttattgagttgatggtaattttggtggttgttggtgatgggtatcacagg 12888569  T
Q  744 tgacggttgttggtgttgagttgggaggcgaagtttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgatg 830  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||||||||||    
T  12888568 tggtggttgttggtgttgagttgggaggcgaagtttactgtctctttcttgtgt-gtggtgagttcaa--gtgtggcgatgatgatg 12888485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 294 - 395
Target Start/End: Complemental strand, 12889023 - 12888919
Alignment:
Q  294 gggcttgctgtggtgggtggcgtc---gccgccggtgactttgggaggttttaacaacataaatcgtggtggttttcattgattgttcctagtggctggt 390  Q
    |||||||||||||||||||||| |   | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |    
T  12889023 gggcttgctgtggtgggtggcggcattgtcgccggtgactttgggaggttttaacaacataaatcgtggtggttttcataggttgttcctggtggctgtt 12888924  T
Q  391 ttttt 395  Q
    |||||    
T  12888923 ttttt 12888919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 12889165 - 12889058
Alignment:
Q  166 gtttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgac 265  Q
    |||||||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||| ||      
T  12889165 gtttcccctttccctcaaatccaaccactatccatcacgatgtagatccaaatggtggtggtgcgacgaggcgaggcctccgcatcacctcacctccggt 12889066  T
Q  266 gtccctca 273  Q
    ||||||||    
T  12889065 gtccctca 12889058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 21064916 - 21064968
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  21064916 taaatatgtaagagtattattgtcaagacaataattaatgttgcattgaaatt 21064968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 50768017 - 50768067
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50768017 taaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 50768067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 770
Target Start/End: Original strand, 46879468 - 46879551
Alignment:
Q  688 catggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaag-tgacggttgttggtgttgagttgggag 770  Q
    |||| ||||||||||| ||||||||||| ||| ||||| ||||||| |||| |||| ||  |||||||||||||||||||||||    
T  46879468 catgttttattgagttaatggtgattttagtgattgtttgtgatgggtatctcaagatggtggttgttggtgttgagttgggag 46879551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 12889261 - 12889207
Alignment:
Q  89 acaatcaagcttctgagcaccgtcgtttctatatttctccacactgtcgtttccc 143  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  12889261 acaatcacgcttctgagcaccaccgtttctatatttctccacaccgtcgtttccc 12889207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 14261199 - 14261249
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  14261199 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 14261249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 20249136 - 20249086
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  20249136 taaatatgtaagggtattattgacaagacaataattaatattgcattgaaa 20249086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 21310576 - 21310626
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  21310576 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 21310626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 22321390 - 22321340
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  22321390 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 22321340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 24706369 - 24706319
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  24706369 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 24706319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40122609 - 40122559
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  40122609 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 40122559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 44568992 - 44569042
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  44568992 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 44569042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 12071715 - 12071765
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  12071715 taaatatgcaagggtattattgacaagacaagaattaatgttgcattgaaa 12071765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 21661657 - 21661607
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  21661657 taaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaa 21661607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 21670421 - 21670371
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  21670421 taaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaa 21670371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 25704806 - 25704856
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||||||||||||||| |||||    
T  25704806 taaatatgcaagggtattattgacaagacaataattaatgttgcactgaaa 25704856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 6129071 - 6129021
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||| |||||||||||||||  ||  |||||||||||||||||||||||    
T  6129071 taaatagataagggtattattgataaaccaataattaatgttgcattgaaa 6129021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 34324705 - 34324655
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||| ||| ||||||||||||||||||    
T  34324705 taaatatgcaagggtattattgacaagaaaatcattaatgttgcattgaaa 34324655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 20714471 - 20714426
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcat 73  Q
    |||||| ||||||||||||||| |||  ||||||||||||||||||    
T  20714471 taaataaataagggtattattgacaaaccaataattaatgttgcat 20714426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 328 - 830
Target Start/End: Complemental strand, 36593646 - 36593140
Alignment:
Q  328 actttgggaggttttaacaacataaatcgtggtgg-ttttcattgattgttcctagtggctggttttttg----gggtgatggtttgctattcgtgatgg 422  Q
    ||||||| |||||||| ||||||||| |||| ||| ||||||| | |||||||| |||| || ||||||     |||||||||||||||||||||| ||     
T  36593646 actttggaaggttttagcaacataaaccgtgatggattttcatagtttgttcctggtggttgttttttttttttgggtgatggtttgctattcgtggtga 36593547  T
Q  423 ctttcagggaggtttttgtgggtggt---------ggtggatgcgaatccggatctgaatccgtaaccatatccggatctggat-tgcgttgttttttga 512  Q
    ||||| ||||||||||||||||||||         ||||||||||||  ||||| ||||       |||||||||||||||||| ||||||||||| |||    
T  36593546 ctttcggggaggtttttgtgggtggttgtagtggtggtggatgcgaactcggatatgaa-------ccatatccggatctggatctgcgttgttttatga 36593454  T
Q  513 attggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttgttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagg 612  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  36593453 attggcaaccaagggagatgtttcggttggtgatgttagagtggtagtgttgttagtgtgctactgttttttgtgaagtttcgaatggaggtgatgcagg 36593354  T
Q  613 gagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgatctcagatctaaggtcatggtttattgagttgatggtgat 712  Q
    ||||  ||||||||| ||||  ||||||||||||||||||||| ||| ||  | |||||||||||||||||||||||||| |||||||||||||||| ||    
T  36593353 gagtggtgttgctgttttggatgatgtccaagtggtggtgatgtagtctgtgtttggtgatctcagatctaaggtcatggattattgagttgatggttat 36593254  T
Q  713 tttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaagtttactgtctctttcttgtgtggtggtgagctcaag 812  Q
    ||||||||||||| ||||||| ||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||  |    
T  36593253 tttggtggttgtttgtgatgggtatcacaagt---ggtggttggtgttgagttgggaggcgaagtttactgtctctttcttgtg-ggtggggagttcggg 36593158  T
Q  813 ggtgtggcgatgatgatg 830  Q
    |||| |||||||||||||    
T  36593157 ggtggggcgatgatgatg 36593140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 36594341 - 36594234
Alignment:
Q  166 gtttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgac 265  Q
    |||| ||||||  ||||||||||||||||| | || |||||||||||||||||| |||||||| || ||||||||| ||| ||| ||||||||||  | |    
T  36594341 gttttcccttttcctcaaatccaaccactattaatcacgatgtagatccaaatgatggtggtgcgatgaggcgcggcctccgcaacacctcacctctgtc 36594242  T
Q  266 gtccctca 273  Q
    ||||||||    
T  36594241 gtccctca 36594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 22388260 - 22388210
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  22388260 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 22388210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 37673865 - 37673815
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  37673865 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 37673815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 1102656 - 1102706
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  |||||| |||||| ||||||||||||||||||||||||||||    
T  1102656 taaatatgcaagggtgttattgacaagacaataattaatgttgcattgaaa 1102706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 3519062 - 3519112
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||| ||||||||    
T  3519062 taaatatgcaagggtattattgacaagacaataattaatgttacattgaaa 3519112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 12969862 - 12969812
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| ||||||||||||||  ||||||||||||||| |||||||||||    
T  12969862 taaatatttaagggtattattgagaagacaataattaatattgcattgaaa 12969812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 23366944 - 23366994
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  23366944 taaatatgcaagggtattattgacaagacaataattaatgttgtattgaaa 23366994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 39938325 - 39938371
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcatt 74  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||    
T  39938325 taaatatgcaagggtattattgacaagacaataattaatgttgcatt 39938371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 39562004 - 39561960
Alignment:
Q  36 taagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    |||||||||||||| |||  |||||||||||||||||||||||||    
T  39562004 taagggtattattgacaaaccaataattaatgttgcattgaaatt 39561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 1646442 - 1646492
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||| |||| |||||||||||||||||    
T  1646442 taaatatgcaagggtattattgacaagataatacttaatgttgcattgaaa 1646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 28110217 - 28110167
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| ||||||||||||||  ||  |||||||||||||||||||||||    
T  28110217 taaatatgtaagggtattattgataaaccaataattaatgttgcattgaaa 28110167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 275 - 830
Target Start/End: Original strand, 38148787 - 38149348
Alignment:
Q  275 gttatcactgttctggtccgggcttgctgtggtgggtggc---gtcgccgccggtgactttgggaggttttaacaacataaatcgtggtgg-ttttcatt 370  Q
    |||| |||||||||||| |||||||||  |||||||||||   | || ||| ||||| ||||| |||||||| |||||||||||||| ||| |||||||     
T  38148787 gttaacactgttctggttcgggcttgcattggtgggtggcagcggcgtcgctggtgaatttggaaggttttagcaacataaatcgtgatggattttcata 38148886  T
Q  371 gattgttcctagtggctggttttttgg-ggtgatggtttgctattcgtgatggctttcagggaggtttttgtgggtggt---------ggtggatgcgaa 460  Q
    | ||||||||  ||| |  ||||||   || ||||||||||||||| || || | ||| ||||||||||||| ||||||         ||||||||||||    
T  38148887 gtttgttcctgatggtttttttttttttggagatggtttgctattcatggtgaccttcggggaggtttttgtaggtggttgtagtggtggtggatgcgaa 38148986  T
Q  461 tccggatctgaatccgtaaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtggggg 559  Q
      ||||| ||||       |||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||  |    
T  38148987 ctcggatatgaa-------ccatatccggatctggttctgcgttgttttatgaattggcaaccaagggagatgtttcggttggtgatgttagaatggtag 38149079  T
Q  560 tgttgttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagt 659  Q
    |||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||||  || | |||| ||||  |||||   |||||||||||||||||    
T  38149080 tgttattagtgtgctactgttttttgtgaagttttgaatggaggtgatgcagggagtggtgcttctgttttggatgatgtgacagtggtggtgatgcagt 38149179  T
Q  660 ttgcatgtggtgatctcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgt 759  Q
     ||  | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||   ||| ||||||||    
T  38149180 ctgtgtttggtgatctcagatctaaggtcatggtttattgagttgatggttattttggtggttgttggtgatgagtatcacaagt---ggtggttggtgt 38149276  T
Q  760 tgagttgggaggcgaagtttactgtctctttcttgtgtggtggtgagctc-aagggtgtggcgatgatgatg 830  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  38149277 tgagttgggaggcgaagtttattgtctctttcttgtgtggtggtgagttcggggggtgtggcgatgatgatg 38149348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 478 - 830
Target Start/End: Complemental strand, 20519589 - 20519239
Alignment:
Q  478 aaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttgttagtgtgctgc 576  Q
    ||||||||| |||| ||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||  |||||||||||||||  |    
T  20519589 aaccatatctggatttggatctgtgttgttttttgaattggcaaccaacgaagatgtttcggttggtgatgttagagtggtagtgttgttagtgtgcaac 20519490  T
Q  577 tgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgatctc 676  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||||||| || || ||||||||||||||||||||  ||| ||| | | ||||||||    
T  20519489 tgtttttggtgaagttttgaatggaggtgatgtagggagtagtgttgctgttttaggtgatgtccaagtggtggtgattgagtctgcgttttgtgatctc 20519390  T
Q  677 agatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaag 776  Q
    ||||||||| |||||||| |||| |||||||| |||||||||||||||||||||||| ||||| ||||   ||| |||||||||||||||||||||||||    
T  20519389 agatctaagatcatggttgattgtgttgatggagattttggtggttgttggtgatgggtatcataagt---ggtggttggtgttgagttgggaggcgaag 20519293  T
Q  777 tttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgatg 830  Q
    |||| ||||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  20519292 tttattgtctctttcttgtgtggtggtgagttcgggggtatggcgatgatgatg 20519239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 478 - 830
Target Start/End: Original strand, 32918993 - 32919341
Alignment:
Q  478 aaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttgttagtgtgctgc 576  Q
    |||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |    
T  32918993 aaccatatccggatctagatctgcgttgttttatgaattggcaaccaagggagatgtttcggttggtgatgttagagtggcagtgttgttagtgtgctac 32919092  T
Q  577 tgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgatctc 676  Q
    ||||||| |||||||||||||||||||||||||| |||||  || |||||| ||||  ||||| ||||||||||||||||||| ||  | ||||||||||    
T  32919093 tgttttttgtgaagtttcgaatggaggtgatgcaaggagt-gtgctgctgttttggatgatgttcaagtggtggtgatgcagtctgtgtttggtgatctc 32919191  T
Q  677 agatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaag 776  Q
    | ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| ||||||||||   ||| |||||||||||||||||||||||||    
T  32919192 atatctaaggtcataatttattgagttgatggtta-tttggtggttgttggtgatgggtatcacaagt---ggtggttggtgttgagttgggaggcgaag 32919287  T
Q  777 tttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgatg 830  Q
    || ||| ||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  32919288 ttcactatctctttcttgtgtggtggtgagttcgtgggtgtggcaatgatgatg 32919341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 20519876 - 20519782
Alignment:
Q  166 gtttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcacct 260  Q
    |||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||    
T  20519876 gtttcccctttccctcaaatccaaccactattcatcacaatgtagatccaaatggtggtggtgcgacgaggcgcggcctccgcatcaccttacct 20519782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 38148646 - 38148753
Alignment:
Q  166 gtttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgac 265  Q
    |||||||||||  |||||||||||||  || | || ||||||||||||||||||| ||||||| || |||| |||| ||| |||||||||||||| || |    
T  38148646 gtttccccttttcctcaaatccaaccgttattaatcacgatgtagatccaaatggcggtggtgcgatgaggtgcggcctccgcatcacctcacctccggc 38148745  T
Q  266 gtccctca 273  Q
    ||||||||    
T  38148746 gtccctca 38148753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 20546415 - 20546365
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  20546415 taaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 20546365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 27035150 - 27035200
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  27035150 taaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 27035200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 2540052 - 2540002
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  2540052 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 2540002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 7147068 - 7147118
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  7147068 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 7147118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 11174345 - 11174295
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  11174345 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 11174295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 30999646 - 30999596
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  30999646 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 30999596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 37345726 - 37345776
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  37345726 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 37345776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40058425 - 40058375
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  40058425 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 40058375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40918853 - 40918803
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  40918853 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 40918803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 3585606 - 3585656
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  3585606 taaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaa 3585656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 11646447 - 11646397
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  11646447 taaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaa 11646397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 27563981 - 27563939
Alignment:
Q  36 taagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  27563981 taagggtattattgacaagtcaataattaatgttgcattgaaa 27563939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 36068235 - 36068285
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  36068235 taaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaa 36068285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 43275521 - 43275471
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||| ||||||||||||||||||||||    
T  43275521 taaatatgcaagggtattattgacaagataataattaatgttgcattgaaa 43275471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 20519727 - 20519652
Alignment:
Q  283 tgttctggtccgggcttgctgtggtgggtggcgtcgccg---ccggtgactttgggaggttttaacaacataaatc 355  Q
    ||||||||| ||||||  ||||||||||||||| ||  |   ||||||||||||||||||||||| ||||||||||    
T  20519727 tgttctggttcgggctcactgtggtgggtggcggcggtgttgccggtgactttgggaggttttaataacataaatc 20519652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 478 - 830
Target Start/End: Complemental strand, 49359146 - 49358794
Alignment:
Q  478 aaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttgttagtgtgctgc 576  Q
    |||||||| ||||||||||| | | ||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||     
T  49359146 aaccatattcggatctggatctacattgttttttgatttggcgaccaagggagatgtttctgttggtgatgttggagtgttggtgttgttagtgtgatgt 49359047  T
Q  577 tgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgatctc 676  Q
    ||||||||||||||||||||||| |||||||| ||||| |  | || |||||||||| |||||||||||||||   ||||||||||| ||||||||| ||    
T  49359046 tgtttttggtgaagtttcgaatgaaggtgatgtagggaatggtcttcctgtcttgggtgatgtccaagtggtg---atgcagtttgcgtgtggtgatatc 49358950  T
Q  677 agatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaa- 775  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||||| ||| |||||||     
T  49358949 agatctaaggttatggtttattaagttcatggtgattttggtggttgttggtgatgggtatcacaagtggtggtttttggtgttgaggtggaaggcgaaa 49358850  T
Q  776 -gtttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgatg 830  Q
     ||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  49358849 tgttcactgtctctttcttgtgtggcggtgagttcaggggtgtggcgatgatgatg 49358794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 49359253 - 49359192
Alignment:
Q  167 tttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtg 228  Q
    ||||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||    
T  49359253 tttcccctttccctcaaatccaaccactatttatcacgatgtagatccaaatggtggtggtg 49359192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 48963274 - 48963324
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  48963274 taaatatataaggatattattgacaagacaataattaatgttgcattgaaa 48963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 13364998 - 13365048
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  13364998 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 13365048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 23088053 - 23088003
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  23088053 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 23088003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 31873984 - 31873935
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  31873984 taaatatataagggtatt-ttgacaagacaataattaatgttgcattgaaa 31873935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 36881435 - 36881485
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  36881435 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 36881485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 46694232 - 46694182
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  46694232 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 46694182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 199010 - 199060
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  199010 taaatatgcaagggtattattgacaaaacaataattaatgttgcattgaaa 199060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 3383231 - 3383281
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||| ||||||||| ||||||||||||||||||||||||||||    
T  3383231 taaatatgcaagagtattattgacaagacaataattaatgttgcattgaaa 3383281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 13703367 - 13703417
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  13703367 taaatatgcaagggtattattgacaacacaataattaatgttgcattgaaa 13703417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 29375287 - 29375337
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||| ||||||| ||||||||||||||||||||||||||||    
T  29375287 taaatatgcaagggcattattgacaagacaataattaatgttgcattgaaa 29375337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 43750291 - 43750341
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||| ||||||||| ||||||||||||||||||||||||||||    
T  43750291 taaatatgcaagagtattattgacaagacaataattaatgttgcattgaaa 43750341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 19241781 - 19241740
Alignment:
Q  37 aagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  19241781 aagggtattattgacaagtcaataattaatgttgcattgaaa 19241740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 32835109 - 32835061
Alignment:
Q  30 aatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||    
T  32835109 aatatttaagggtattattgacaaaacaatacttaatgttgcattgaaa 32835061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 48820508 - 48820545
Alignment:
Q  41 gtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaa 48820545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 476 - 826
Target Start/End: Complemental strand, 22697133 - 22696786
Alignment:
Q  476 gtaaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttgtt-agtgtgc 573  Q
    |||||||||||||||||||||| |||||||||||| |||||| | ||||||||||| ||||||| ||||||||||| ||||| ||||||||| |||| ||    
T  22697133 gtaaccatatccggatctggatctgcgttgttttt-gaattgatgaccaagggagacgtttcggctggtgatgttgaagtggtggtgttgtttagtgagc 22697035  T
Q  574 tgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgat 673  Q
    | |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||    
T  22697034 tactgtttttggtgaagttttgaatggaggtgatgtagggagcagtgttgctgtcttgggtgatgtccaagtggcggtgatgcagtctacgtgtggtgat 22696935  T
Q  674 ctcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcg 773  Q
    ||||||||||||||||||| ||||||||||||||||||      |||||||||||||| | |||||||||||  ||||||||||||| || |||||||||    
T  22696934 ctcagatctaaggtcatggattattgagttgatggtga------tggttgttggtgatcggtatcacaagtggtggttgttggtgtttagctgggaggcg 22696841  T
Q  774 aa--gtttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgat 826  Q
    ||  ||| ||||||||||||||||||||||||||| |   |||||||||||||||    
T  22696840 aaatgttcactgtctctttcttgtgtggtggtgagtttgggggtgtggcgatgat 22696786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 528 - 732
Target Start/End: Original strand, 34501223 - 34501420
Alignment:
Q  528 agatgtttcggttggtgatgttggagtgggggtgttgttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgt 627  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||  |||||||||    
T  34501223 agatgtttcggttggtgatgttggagtggtggtgttgttagtgtgctactatttttggtgaagtttcgaatggaggtgatgttgggagtggtgttgctgt 34501322  T
Q  628 cttgggggatgtccaagtggtggtgatgcagtttgcatgtggtgatctcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttgg 727  Q
    |||||| |||||||||||||| |||||||||| ||| ||||||       ||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  34501323 cttgggtgatgtccaagtggtagtgatgcagtctgcgtgtggt-------gatataaggtcatggtatattgagttgatggtgattttagtggttgttgg 34501415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 735 - 830
Target Start/End: Original strand, 34502715 - 34502810
Alignment:
Q  735 tatcacaagtgacggttgttggtgttgagttgggaggcgaagtttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgatg 830  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||| ||||||||||    
T  34502715 tatcacaagtggtggttgttgctgttgagttgggaggcgaagtttactgtctctttcttctgtggtggtgagtttgagggtgtggagatgatgatg 34502810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 22697330 - 22697206
Alignment:
Q  295 ggcttgctgtggtgggtggcg---tcgccgccggtgactttgggaggttttaacaacataaatcgtggtggttttcattgattgttcctagtggctggtt 391  Q
    |||||||||||||||||||||   ||| ||||||||| |||||||||||||| ||||| ||| || |||||||||||| | || ||||| ||||||||||    
T  22697330 ggcttgctgtggtgggtggcggcgtcgtcgccggtgattttgggaggttttagcaacacaaaacgcggtggttttcatagtttcttcctggtggctggtt 22697231  T
Q  392 tttt-ggggtgatggtttgctattc 415  Q
    |||| ||||||||||||||||||||    
T  22697230 ttttgggggtgatggtttgctattc 22697206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 22703621 - 22703528
Alignment:
Q  179 ctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgacgtccctca 273  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||| | ||| |||||||||||||| || |||||||||    
T  22703621 ctcaaatccaac-actattcatcacgatgtagatccaaatggtggtggtgcgacgaggcgcagcctccgcatcacctcacctccggcgtccctca 22703528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 8626637 - 8626687
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  8626637 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 8626687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 13757362 - 13757412
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  13757362 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 13757412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 17942598 - 17942648
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  17942598 taaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaa 17942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 29260347 - 29260397
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  29260347 taaatatgtaagggtattattgacaagacagtaattaatgttgcattgaaa 29260397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 1605733 - 1605785
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    |||||||  ||||||||||||| |||||||||||||||||||| |||||||||    
T  1605733 taaatatgcaagggtattattgacaagacaataattaatgttgtattgaaatt 1605785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 8235780 - 8235830
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| ||||||||||||||  ||||||||||||||| |||||||||||    
T  8235780 taaatatgtaagggtattattgataagacaataattaatattgcattgaaa 8235830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 15064817 - 15064767
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||||||||||||| |||||||    
T  15064817 taaatatgcaagggtattattgacaagacaataattaatgttgtattgaaa 15064767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 31559860 - 31559810
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||  ||||||||||||||||||||||||||||    
T  31559860 taaatatgcaagggtattattaacaagacaataattaatgttgcattgaaa 31559810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 30734605 - 30734553
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    |||||||  |||||||||||||  |||| ||||||||||||||||||||||||    
T  30734605 taaatatgcaagggtattattgataagataataattaatgttgcattgaaatt 30734553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 4129582 - 4129631
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||| ||||||||||||||||||    
T  4129582 taaatatgcaagggtattattgacaagacaat-attaatgttgcattgaaa 4129631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 847898 - 847849
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaa 77  Q
    ||||||| |||| ||||||||| |||  ||||||||||||||||||||||    
T  847898 taaatatttaagagtattattgacaaagcaataattaatgttgcattgaa 847849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 2e-88; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 444 - 829
Target Start/End: Complemental strand, 36934865 - 36934480
Alignment:
Q  444 gtggtggtggatgcgaatccggatctgaatccgtaaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttgg 542  Q
    |||||||| |||| ||||||||||||||||| |||||||||||||||| ||||| |  ||| ||||||||||| |  | ||||||| | |||||||||||    
T  36934865 gtggtggtagatgtgaatccggatctgaatctgtaaccatatccggatttggatctatgttcttttttgaatttgcgatcaagggacacgtttcggttgg 36934766  T
Q  543 tgatgttggagtgggggtgttgttagtgtgctgctgttttt-ggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtcc 641  Q
    |||||| ||||||| ||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||  || |||| ||||||| |||||||    
T  36934765 tgatgtcggagtggtggtgttgttagtgcgctgttgttttttggtgaagtttcgaagggaggtgatgcagggagtggtgctgctatcttgggtgatgtcc 36934666  T
Q  642 aagtggtggtgatgcagtttgcatgtggtgatc-tcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcac 740  Q
    |||||||||||||||||  ||  |||||||||| ||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  36934665 aagtggtggtgatgcagcctgagtgtggtgatcttcagatcgaaggtcatggtttatt--gttgatggtaattttggtggttgttggtgatgggtatcac 36934568  T
Q  741 aagtgacggttgttggtgttgagttgggaggcgaa--gtttactgtctctttcttgtgtggtggtgagctcaagggtgtggcgatgatgat 829  Q
    |||||  |||  |||||||||||||||||||||||   || |||||||| ||||  |||||||||||| ||   |||||||||||||||||    
T  36934567 aagtggtggtgtttggtgttgagttgggaggcgaaatattcactgtctc-ttct--tgtggtggtgagttcggaggtgtggcgatgatgat 36934480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 466 - 694
Target Start/End: Original strand, 5888702 - 5888932
Alignment:
Q  466 atctgaatccgtaaccatatccggatctggatt-gcgttgttttttgaattggtaaccaagggagatgtttcggttggtgatgttggagtgggggtgttg 564  Q
    ||||||||  |||| ||||||| |||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||  |||||||    
T  5888702 atctgaatttgtaagcatatcctgatctggatttgcgttgttttttgaattggcgaccaagggagacgtttcggttggtgatgtcggagtgttggtgttg 5888801  T
Q  565 ttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttgggggatgtccaagtggtggtgatgcagtttgca 664  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||  ||||  ||||||| ||||||| ||||||||||||||||||||| ||| ||||    
T  5888802 ttagtgtgctgctgtttttggtgaagtttcgaatggaggtgctgcatagagtggtgttgctatcttgggtgatgtccaagtggtggtgatgtagtctgca 5888901  T
Q  665 tgtggtgatc-tcagatctaaggtcatggtt 694  Q
    |||||||||| ||| |||||||||| |||||    
T  5888902 tgtggtgatcttcatatctaaggtcgtggtt 5888932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 320 - 453
Target Start/End: Original strand, 5888520 - 5888654
Alignment:
Q  320 cgccggtgactttgggaggttttaacaacataaatcgtggtggtttt-cattgattgttcctagtggctggttttttggggtgatggtttgctattcgtg 418  Q
    ||||||||||||||||||||||||  |||| |||| |  |||||||| ||| | |||||||| ||| |||||||||||||||||||||||||||||||||    
T  5888520 cgccggtgactttgggaggttttagtaacacaaattgctgtggtttttcatagtttgttcctggtgcctggttttttggggtgatggtttgctattcgtg 5888619  T
Q  419 atggctttcagggaggtttttgtgggtggtggtgg 453  Q
     | ||||||||||||||||||||||||||||||||    
T  5888620 gttgctttcagggaggtttttgtgggtggtggtgg 5888654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 283 - 453
Target Start/End: Complemental strand, 36935060 - 36934886
Alignment:
Q  283 tgttctggtccgggcttgctgtggtgggtggcgtcgcc---gccggtgactttgggaggttttaacaacataaatcgtggtgg-ttttcattgattgttc 378  Q
    ||||||||| ||||||||||||||||||||||| || |   | ||||||||||||| | ||||| ||||| |||||| ||||| ||||| | | ||||||    
T  36935060 tgttctggttcgggcttgctgtggtgggtggcggcggcagcgtcggtgactttgggtgcttttagcaacacaaatcgcggtgggttttcgtagtttgttc 36934961  T
Q  379 ctagtggctggttttttggggtgatggtttgctattcgtgatggctttcagggaggtttttgtgggtggtggtgg 453  Q
     | ||||  | ||||||||||||||| ||||||||| ||| |||||||  |||||||||||||||||||||||||    
T  36934960 ttggtggtggtttttttggggtgatgctttgctatttgtggtggcttttggggaggtttttgtgggtggtggtgg 36934886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 690 - 806
Target Start/End: Original strand, 5892651 - 5892769
Alignment:
Q  690 tggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaa--gtttactgtctc 787  Q
    |||| ||||||||||||||||||||||||| | ||| ||||||| |||||||||||  |||  |||||||| ||||||||||||||  ||| ||||||||    
T  5892651 tggtgtattgagttgatggtgattttggtgttcgttagtgatgggtatcacaagtggtggtgtttggtgttaagttgggaggcgaaatgttcactgtctc 5892750  T
Q  788 tttcttgtgtggtggtgag 806  Q
    ||||||||||||| |||||    
T  5892751 tttcttgtgtggttgtgag 5892769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 5888351 - 5888444
Alignment:
Q  180 tcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgacgtccctca 273  Q
    |||||||||||||||| |||| |||||||| |||||| ||||||||| | |||||||||||| ||| |||||||||||||| || |||||||||    
T  5888351 tcaaatccaaccactattcatcacgatgtaaatccaattggtggtggggcgacgaggcgcggcctccgcatcacctcacctccggcgtccctca 5888444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 10981663 - 10981713
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  10981663 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 10981713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 25614475 - 25614425
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  25614475 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 25614425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 36453246 - 36453196
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  36453246 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 36453196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 47110605 - 47110655
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  47110605 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 47110655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 27813966 - 27814016
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  27813966 taaatatgcaagggtattattgacaacacaataattaatgttgcattgaaa 27814016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 5888309 - 5888341
Alignment:
Q  129 acactgtcgtttcccctttccctcaaatccaac 161  Q
    |||||||||||||||||||||||||||||||||    
T  5888309 acactgtcgtttcccctttccctcaaatccaac 5888341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 3091668 - 3091718
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| |||  ||||| |||||||||||||||||    
T  3091668 taaatatgtaagggtattattgacaaaccaatatttaatgttgcattgaaa 3091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 27941098 - 27941056
Alignment:
Q  36 taagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||||||||| |||| ||||||||||||||||| |||||    
T  27941098 taagggtattattgacaagccaataattaatgttgcaatgaaa 27941056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 40349117 - 40349167
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| | | ||||||||||||||||||||||||    
T  40349117 taaatatgcaagggtattattgaccaaacaataattaatgttgcattgaaa 40349167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 36935161 - 36935096
Alignment:
Q  208 tagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgacgtccctca 273  Q
    ||||||||| |||| || ||| |||||||||||| ||| |||||||||||||| || | |||||||    
T  36935161 tagatccaattggtagtcgtgcgacgaggcgcggcctccgcatcacctcacctccggcatccctca 36935096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 4e-62; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 536 - 729
Target Start/End: Original strand, 27631784 - 27631977
Alignment:
Q  536 cggttggtgatgttggagtgggggtgttgttagtgtgctgctgtttttggtgaagtttcgaatggaggtgatgcagggagtaatgttgctgtcttggggg 635  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||  || |||  ||||||| |    
T  27631784 cggttggtgatgttggagtagtggtgttgttagtgtgctgctatttttggtgatgttttgaatggaggtggtgcagggagtggtgatgccatcttgggtg 27631883  T
Q  636 atgtccaagtggtggtgatgcagtttgcatgtggtgatctcagatctaaggtcatggtttattgagttgatggtgattttggtggttgttggtg 729  Q
    |||||||  ||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27631884 atgtccacatggtggtgatgtagtctgcatgtggtgatctcagatctaaggtaatgatttattgagttgatggtgattttggtggttgttggtg 27631977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 283 - 453
Target Start/End: Original strand, 36607195 - 36607370
Alignment:
Q  283 tgttctggtccgggcttgctgtggtgggtggcgtcgccgccg---gtgactttgggaggttttaacaacataaatcgtggtgg-ttttcattgattgttc 378  Q
    |||||||||  |||||||||||||||||||||| || || ||   ||||||||| ||||||||| ||||| |||| | ||||| ||||||| | ||||||    
T  36607195 tgttctggtttgggcttgctgtggtgggtggcggcgacgtcgctagtgactttgagaggttttagcaacacaaattgcggtgggttttcatagtttgttc 36607294  T
Q  379 ctagtggctggtttttt-ggggtgatggtttgctattcgtgatggctttcagggaggtttttgtgggtggtggtgg 453  Q
    ||  ||| ||| ||||| |||||||||||||||||||| || |||||||| | |||||||||||||||||||||||    
T  36607295 ctgatgggtggatttttaggggtgatggtttgctattcatggtggctttcggagaggtttttgtgggtggtggtgg 36607370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 283 - 453
Target Start/End: Original strand, 27631500 - 27631673
Alignment:
Q  283 tgttctggtccgggcttgctgtggtgggtggcg---tcgccgccggtgactttgggaggttttaacaacataaatcgtggtgg-ttttcattgattgttc 378  Q
    ||||||||| ||||||||||||||||||| |||   ||| | ||||||||| | |||||||||| |||   |||||| | ||| ||||||| | ||||||    
T  27631500 tgttctggttcgggcttgctgtggtgggtagcggtgtcgtcaccggtgactctaggaggttttagcaatgcaaatcgcgatgggttttcatagtttgttc 27631599  T
Q  379 ctagtggctggttttttggggtgatggtttgctattcgtgatggctttcagggaggtttttgtgggtggtggtgg 453  Q
    || |||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  27631600 ctggtggttggtttttgggggtgatggtttgctattcgtggtggc-ttcagggaggtttatgagggtggtggtgg 27631673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 36607057 - 36607159
Alignment:
Q  171 ccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggtgtgacgaggcgcggtctctgcatcacctcaccttcgacgtccc 270  Q
    ||||||| ||||||| ||||||||| |||| ||||||||||||||| ||||||||||| ||||||| |||| ||| ||||||||||||||||| ||||||    
T  36607057 ccctttccctcaaattcaaccactattcatcacgatgtagatccaattggtggtggtgcgacgaggtgcggcctccgcatcacctcaccttcggcgtccc 36607156  T
Q  271 tca 273  Q
    |||    
T  36607157 tca 36607159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 709 - 830
Target Start/End: Original strand, 36607593 - 36607717
Alignment:
Q  709 tgattttggtggttgttggtgatggatatcacaagtgacggt-tgttggtgttgagttgggaggcgaa--gtttactgtctctttcttgtgtggtggtga 805  Q
    ||||||||||||||||| ||||||| |||||| ||||  ||| | |||||||||||||||||||||||  ||| | ||||||||||| ||||| | ||||    
T  36607593 tgattttggtggttgttagtgatgggtatcacgagtggtggtgttttggtgttgagttgggaggcgaaatgttcaatgtctctttctcgtgtgatagtga 36607692  T
Q  806 gctcaagggtgtggcgatgatgatg 830  Q
    | ||  |||||||| ||||||||||    
T  36607693 gttcgggggtgtggtgatgatgatg 36607717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 27631410 - 27631473
Alignment:
Q  164 ttgtttcccctttctctcaaatccaaccactaatcattacgatgtagatccaaatggtggtggt 227  Q
    |||||| ||||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||||    
T  27631410 ttgttttccctttccctcaaatccaaccactattcatcacgatgtaaatccaaattgtggtggt 27631473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 12806975 - 12806925
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  12806975 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 12806925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 23097846 - 23097796
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  23097846 taaatatgtaagggtattattgacaagacaataattaatattgcattgaaa 23097796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 25683351 - 25683301
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  25683351 taaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaa 25683301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 25773804 - 25773854
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  25773804 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 25773854  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 37900745 - 37900695
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  37900745 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 37900695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40886732 - 40886682
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  40886732 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 40886682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 444 - 548
Target Start/End: Original strand, 36607401 - 36607501
Alignment:
Q  444 gtggtggtggatgcgaatccggatctgaatccgtaaccatatccggatctggat-tgcgttgttttttgaattggtaaccaagggagatgtttcggttgg 542  Q
    ||||||||||||||||||||||||||||     |||||||||   ||||||||| || |||||||||| ||||||  |||||  |||| |||||||||||    
T  36607401 gtggtggtggatgcgaatccggatctga-----taaccatatatcgatctggatatgtgttgtttttttaattggcgaccaacagagacgtttcggttgg 36607495  T
Q  543 tgatgt 548  Q
    ||||||    
T  36607496 tgatgt 36607501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 10285168 - 10285130
Alignment:
Q  40 ggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  10285168 ggtattattgacaagacaataattaatgttgcattgaaa 10285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 30720614 - 30720564
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  30720614 taaatatgcaagggtattattgacaagacaataactaatgttgcattgaaa 30720564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 36561221 - 36561171
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  36561221 taaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaa 36561171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 16983421 - 16983462
Alignment:
Q  37 aagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  16983421 aagggtattattgaaaagacaataattaatgttgcattgaaa 16983462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 7277537 - 7277493
Alignment:
Q  36 taagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  7277537 taagggcattattgacaagacaataattaattttgcattgaaatt 7277493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 797
Target Start/End: Original strand, 27631967 - 27632018
Alignment:
Q  748 ggttgttggtgttgagttgggaggcgaa--gtttactgtctctttcttgtgt 797  Q
    ||||||||||||||||||||||||||||  ||| | ||||||||||||||||    
T  27631967 ggttgttggtgttgagttgggaggcgaaatgttcattgtctctttcttgtgt 27632018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 16054266 - 16054316
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||| ||||||||||||||| |||   ||||||||||||||||||||||    
T  16054266 taaatagataagggtattattgacaaactaataattaatgttgcattgaaa 16054316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 829
Target Start/End: Original strand, 32946613 - 32946756
Alignment:
Q  686 gtcatggtttattgagttgatggtgattttggtggttgttggtgatggatatcacaagtgacggttgttggtgttgagttgggaggcgaagtttactgtc 785  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||   |||||||||||  |||||||| |||||| |||||||||||| | | |        
T  32946613 gtcatggtttattgagttaatggtaattttggtggttgttggtgatatgtatcacaagtggtggttgttgatgttgatttgggaggcgaaatgttcaccg 32946712  T
Q  786 tctttcttgtgtggtggtgagctcaagggtgtggcgatgatgat 829  Q
    ||||||||||||||||||||| ||  |||||||| || ||||||    
T  32946713 tctttcttgtgtggtggtgagttcgtgggtgtggtgacgatgat 32946756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 23526394 - 23526444
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23526394 taaatatgtaagggtattattgacaagacaataattaatgttgcattgaaa 23526444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 321781 - 321831
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  321781 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 321831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 23045401 - 23045351
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  23045401 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 23045351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 27211077 - 27211027
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  27211077 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 27211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40783779 - 40783729
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  40783779 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 40783729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 47037974 - 47037924
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  47037974 taaatatgcaagggtattattgacaagacaataattaatgttgcattgaaa 47037924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 33082899 - 33082951
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    ||||||| ||||||||||||||  ||||||||||||||| |||||||||||||    
T  33082899 taaatatttaagggtattattgagaagacaataattaatattgcattgaaatt 33082951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 31061581 - 31061531
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||||||||    
T  31061581 taaatatgtgagggtattattgtcaaaccaataattaatgttgcattgaaa 31061531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 40261407 - 40261357
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||||||    
T  40261407 taaatatgtaagggtattattgacaaaccaataattaatgttgcattgaaa 40261357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 284488 - 284538
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  |||||||||||||  ||| |||||||||||||||||||||||    
T  284488 taaatatgcaagggtattattgataagtcaataattaatgttgcattgaaa 284538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 40562396 - 40562358
Alignment:
Q  40 ggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  40562396 ggtatcattgacaagacaataattaatgttgcattgaaa 40562358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 46771793 - 46771843
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    ||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||    
T  46771793 taaatatgtaagagtattattgacaagaaaataattaatgttacattgaaa 46771843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 389 - 337
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    ||||||| ||| | |||||||| |||||||||||||||||||||||| |||||    
T  389 taaatatgtaatgatattattgacaagacaataattaatgttgcattaaaatt 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 65287 - 65235
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaatt 80  Q
    |||||| ||||||||||||||| |||  ||||||||||| |||||||||||||    
T  65287 taaatagataagggtattattgacaaaccaataattaatattgcattgaaatt 65235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 317 - 366
Alignment:
Q  28 taaatatataagggtattattgtcaagacaataattaatgttgcattgaaa 78  Q
    |||||||  ||||||||||||| ||||||||| ||||||||||||||||||    
T  317 taaatatgcaagggtattattgacaagacaat-attaatgttgcattgaaa 366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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