View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_high_21 (Length: 227)
Name: NF21616_high_21
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 50983915 - 50984091
Alignment:
| Q |
20 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt |
119 |
Q |
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| T |
50983915 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt |
50984014 |
T |
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| Q |
120 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc |
196 |
Q |
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| T |
50984015 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc |
50984091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 51087049 - 51087225
Alignment:
| Q |
20 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51087049 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt |
51087148 |
T |
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| Q |
120 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51087149 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc |
51087225 |
T |
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