View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_high_4 (Length: 609)
Name: NF21616_high_4
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 282 - 531
Target Start/End: Original strand, 4245146 - 4245374
Alignment:
| Q |
282 |
catcacagtcagcaagattgcataagataaagctaagatataccccacgtattgaccacgtatgcgctctttctttcattcttcctcattttttgacatg |
381 |
Q |
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| T |
4245146 |
catcacagtcagcaagattgcataagatgaagctacgatataccccacgtat-----------gcgctctttctttcatttttc----------gacatg |
4245224 |
T |
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| Q |
382 |
tagtccaatttaagagtaaagttactttatattttattttatgctttttcattaatacaattatcccaaatatggcatatcaaaattcaaaggtaatact |
481 |
Q |
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| T |
4245225 |
tagtccaatttaagagtaaagttaatttatattttattttatgctttttcattaatacagttatcccaaatatggcatatcaaatttcaaaggtaatacc |
4245324 |
T |
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| Q |
482 |
attaaatattgtatatttttggtcaaaaatttatcatactccctcgtccc |
531 |
Q |
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| T |
4245325 |
attaaatattgtatatttttggtcaaaaatttattatactccctcgtccc |
4245374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 4244835 - 4244992
Alignment:
| Q |
11 |
caaaggtgatgaggctaaatattggaagataaacactatgggttttgaatattgatggtgcaacaaactagcatatattatataatgttaatttacgcgc |
110 |
Q |
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| T |
4244835 |
caaaggtgatgaggctaaatattggaagataaacactatgggttttgaatattgatggtgcaacaaactagcatattatatataatgttaatttacgcgc |
4244934 |
T |
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| Q |
111 |
taacttataaatgcagtatatattccttaacatgcaagattcaatttcttgatgaggatt |
170 |
Q |
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| T |
4244935 |
taacttataaatgcag--tatattccttaacatgcaagattcaatttcttgataaggatt |
4244992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 4245376 - 4245422
Alignment:
| Q |
552 |
taattttattgtgttattcttattaactattggtttgttgttattat |
598 |
Q |
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| T |
4245376 |
taattttattgagttattcttattaagtattggtttgttgttattat |
4245422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 6188241 - 6188300
Alignment:
| Q |
320 |
tataccccacgtattgaccacgtatgcgctctttctttcattcttcctcattttttgaca |
379 |
Q |
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| T |
6188241 |
tataccccatgtattgaccacgtatgtgttctttctttcattcttcctcattgtttgaca |
6188300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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