View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21616_high_5 (Length: 499)
Name: NF21616_high_5
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 50531893 - 50532372
Alignment:
| Q |
1 |
aggatattgaatgaagggtatgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531893 |
aggatattgaatgaagggtatgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaacc |
50531992 |
T |
|
| Q |
101 |
atggcagagattgattcaagcaaaccaactgtcaatggtgccaaacccttacagcctaaaagcagcacatagtttgtttcacctttaacgttatataaac |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531993 |
atggcagagattgattcaagcaagccaactgtcaatggtgccaaacccttacaacctaaaagcagcacatagtttgtttcacctttaacgttatataaag |
50532092 |
T |
|
| Q |
201 |
tttacaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaaactatagatataatatatatgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50532093 |
tttacaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaagctatagatataatatatatgta |
50532192 |
T |
|
| Q |
301 |
aaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgatatttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50532193 |
aaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgatatttta |
50532292 |
T |
|
| Q |
401 |
cttaaaagtcgatacaaaccgtaacataaacacctatgttacatatgttttatggtggataacgtttcttataaatggat |
480 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50532293 |
cttaaaagtcaatacaaaccgtaacataaacacctatgttacatatgttttatggtggataatgtttcttataaatggat |
50532372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 50533612 - 50533898
Alignment:
| Q |
20 |
atgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaaccatggcagagattgattcaa |
119 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
50533612 |
atgaataaaaccggggtatttaatttcaatggttggcttcatgtgaaaattcaaggt-gaaaccctaaccgaccggaa-ccatggcagagatt----caa |
50533705 |
T |
|
| Q |
120 |
gcaaaccaactgtcaatggtgccaaacccttacagcctaaaag-----------cagcacatagtttgtttcacctttaacgtta-----tataaacttt |
203 |
Q |
| |
|
|||| |||||||| || |||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||| || ||| || |
|
|
| T |
50533706 |
gcaagccaactgtgaaaggtgacaaacctatacaacctaaaagtttatgtatatcagcacatagtttgtttcacctttaacgttacgttataaaaagtta |
50533805 |
T |
|
| Q |
204 |
acaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaaactatagatataatatata |
296 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| |||||||||| | ||| |||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
50533806 |
acaagtctgggtttgtattgacaaagaatatatcccctaacttgttctctttaagccatgggtttatgtccaaaaatatagatataatatata |
50533898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 50534305 - 50534452
Alignment:
| Q |
286 |
tataatatatatgtaaaaattgtattaatccgatcggattcaaactccattg-aaaaaacaatctaatctcgaccaaattgcatgttattttatttttga |
384 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||| |||| || |
|
|
| T |
50534305 |
tataatatatatgtaaaaattgaattaatccaataggattcaaactccgttgtaaaaaacaatccaatctcaaccaaattgcatgatattttgttttaga |
50534404 |
T |
|
| Q |
385 |
atcgaatgatattttacttaaaagtcgatacaaaccgtaacataaaca |
432 |
Q |
| |
|
|||||||||| |||| || ||||||||| ||||||||||| |||||| |
|
|
| T |
50534405 |
atcgaatgatcatttatttgaaagtcgattcaaaccgtaacgtaaaca |
50534452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 50538535 - 50538676
Alignment:
| Q |
297 |
tgtaaaaattgtatt-aatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgata |
395 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || | | | ||| | ||| | || ||||| |||||||| |||| |
|
|
| T |
50538535 |
tgtaaaaattgaatttaatccgatcggattcaaactccattgaaaaaacaatccaaacacaattaaaatacatccaaattaattttagaatcgaaagata |
50538634 |
T |
|
| Q |
396 |
ttttacttaaaagtcgatacaaaccgtaacataaacacctat |
437 |
Q |
| |
|
| |||||| ||||||||| |||||||||||| ||| |||||| |
|
|
| T |
50538635 |
tcttacttgaaagtcgattcaaaccgtaacacaaagacctat |
50538676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 44902788 - 44902735
Alignment:
| Q |
367 |
atgttattttatttttgaatcgaatgatattttacttaaaagtcgatacaaacc |
420 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||| ||| ||||| |||||| |
|
|
| T |
44902788 |
atgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaacc |
44902735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University