View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_high_6 (Length: 460)
Name: NF21616_high_6
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 20189542 - 20189283
Alignment:
| Q |
10 |
catcatcagcataaatatacaagccttaagaccagaatagtgttgggagagtttatatttggtaatatgactctcctccnnnnnnnttacttaagtttga |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20189542 |
catcattagcataaatatacaagccttaagaccagaatagtgttgggagagtttatatttggtaatatgactctcctccagaaaaattacttaagtttga |
20189443 |
T |
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| Q |
110 |
ttcctagagttgttggaggtagctcaatcttgcgtgaaaaaatgaatgtccccctacaacgaaaaaccaactccgcttacttgaggtcaatcactaatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20189442 |
ttcctagagttgttggaggtagctcaatcttgcgtgaaaaaatgaatgtcccgctacaatgaaaaaccaactccgcttacttgaggtcaatcactaatta |
20189343 |
T |
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| Q |
210 |
agtaatggcaatgcatcagaagtatttggatcttgtgtgtgcccccacggatttggatca |
269 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20189342 |
agtaatggcaatgcatcagaagtatttagatcttgtgtgtgcccccacggatttggatca |
20189283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 20189195 - 20189136
Alignment:
| Q |
357 |
aaacatcaccatttctcctattttactcaaatttagtctaaagtcaactctacctttctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20189195 |
aaacatcaccatttctcctattttactcaaatttagtctaaagtcaactctacctttctc |
20189136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 44274054 - 44273795
Alignment:
| Q |
10 |
catcatcagcataaatatacaagccttaagaccagaatagtgttgggagagtttatatttggtaatatgactctcctccnnnnnnnttacttaagtttga |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44274054 |
catcattagcataaatatacaagccttaagaccagaatagtgttgggagagtttatatttggtaatatgactctcctccagaaaaattacttaagtttga |
44273955 |
T |
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| Q |
110 |
ttcctagagttgttggaggtagctcaatcttgcgtgaaaaaatgaatgtccccctacaacgaaaaaccaactccgcttacttgaggtcaatcactaatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44273954 |
ttcctagagttgttggaggtagctcaatcttgcgtgaaaaaatgaatgtcccgctacaatgaaaaaccaactccgcttacttgaggtcaatcactaatta |
44273855 |
T |
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| Q |
210 |
agtaatggcaatgcatcagaagtatttggatcttgtgtgtgcccccacggatttggatca |
269 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44273854 |
agtaatggcaatgcatcagaagtatttagatcttgtgtgtgcccccacggatttggatca |
44273795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 44273707 - 44273648
Alignment:
| Q |
357 |
aaacatcaccatttctcctattttactcaaatttagtctaaagtcaactctacctttctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44273707 |
aaacatcaccatttctcctattttactcaaatttagtctaaagtcaactctacctttctc |
44273648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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