View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_high_8 (Length: 362)
Name: NF21616_high_8
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 1452520 - 1452852
Alignment:
| Q |
18 |
actttaagtattagttattatatttatatggttcgagagtaaattgatgaaagaatgataatttaagaactaaatttaagaatggttccatttgctttga |
117 |
Q |
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| T |
1452520 |
actttaagtattagttattatatttatatggttcgagagtaaattaatttaagaacgataatttaagaactaaatttaagaatggttccatttgctttga |
1452619 |
T |
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| Q |
118 |
tacctcggtgctgctggttgcaggaaattgttaaaccaaatggtacaggccaacnnnnnnnctaccaaaaagtaaatttgacttgcaacaaaatatagaa |
217 |
Q |
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| T |
1452620 |
tacctcggtgctgctggttgcaggaaattgttaaaccaaatggtacaggccaacaaaaaaactaccaaaaagtaaatttgacttgcaacaaaatatagaa |
1452719 |
T |
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| Q |
218 |
aacaaagtacgttataaactttatgtctattctgtccttgcnnnnnnnnnnnnnnnnnnnnngtacaattggaagaattaattactaataatttagaata |
317 |
Q |
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| T |
1452720 |
aacaaagtacattataaactttatgtctattctgtccttgctttttgattttttttggttttgtacaattggaagaattaattactaataatttagaata |
1452819 |
T |
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| Q |
318 |
aaagagattgttgaagtataattgcttgagtat |
350 |
Q |
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| T |
1452820 |
aaagagattgatgaagtataattgcttgagtat |
1452852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 1453842 - 1453990
Alignment:
| Q |
18 |
actttaagtattagttattatatttatatggttcgagagtaaattgatgaaagaatgataa-tttaagaactaaatttaagaatggttccatttgctttg |
116 |
Q |
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|||||| |||| |||||| ||||||||||||| |||| ||||||| | ||||||||||| ||||||||| |||| |||||||| |||| || |||||| |
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| T |
1453842 |
actttaggtatcggttattttatttatatggttagagactaaattggtttaagaatgataattttaagaacaaaatctaagaatgcttcctttagctttg |
1453941 |
T |
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| Q |
117 |
atacctcggtgc-tgctggttgcaggaaattgttaaaccaaatggtaca |
164 |
Q |
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| T |
1453942 |
atgcatcagttcttactggttgcaggaatttggtaaaccaaatggtaca |
1453990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 1453996 - 1454028
Alignment:
| Q |
181 |
accaaaaagtaaatttgacttgcaacaaaatat |
213 |
Q |
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| T |
1453996 |
accaaaaagtaaatttgacttgcaccaaaatat |
1454028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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