View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_high_9 (Length: 361)
Name: NF21616_high_9
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 17166829 - 17166500
Alignment:
| Q |
20 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
119 |
Q |
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| T |
17166829 |
ttattttcttatgcaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttaccttcttggtatgacaat |
17166730 |
T |
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| Q |
120 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttggattagaaaaagtttaatctaagtttaattgcagttttgaccccttt |
219 |
Q |
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| T |
17166729 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttggactagaaaaagtttaatctaagtttaattgcagttttgaccccttt |
17166630 |
T |
|
| Q |
220 |
attttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggtt |
319 |
Q |
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| T |
17166629 |
attttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttggtcatttatataggtgtggtaattggatgtgggtggcaagttatggtt |
17166530 |
T |
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| Q |
320 |
ggttacataaatttggcatgctattatatt |
349 |
Q |
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| T |
17166529 |
ggttacataaatttggcatgctattatatt |
17166500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 17149183 - 17149013
Alignment:
| Q |
20 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
119 |
Q |
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| T |
17149183 |
ttattttcttgagtaaagaaaagtttgcattcatctttaccaacagtgatgatttgatacatgctgcaagtgaattagcataccttcttggtataaccat |
17149084 |
T |
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| Q |
120 |
ggttatcaacagtatttcacaaaccatatcaggttataatttacttgctt-ttggattagaaaaagtttaat |
190 |
Q |
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| T |
17149083 |
ggttatcaacagtatctcacaaactatttcaggtgatta-ttacttgcttggttgactagaaaaagtttaat |
17149013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 17135402 - 17135269
Alignment:
| Q |
20 |
ttattttcttatgtaaagaaaaatttgccttcatctttaccaatagtgatgatataatacatgctgcaagtgaattagcttatcttcttggtataacaat |
119 |
Q |
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|||||||||| | ||| || |||||||| |||||||||||| |||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||| || |
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| T |
17135402 |
ttattttcttgagcaaacaagaatttgccaccatctttaccaaaagtgtggatatgatacatgctgctagtgaattagcatattttcttggtataaccat |
17135303 |
T |
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| Q |
120 |
ggttatcaacagtatttcacaaaccatatcaggt |
153 |
Q |
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| T |
17135302 |
ggttctcaacagtatttcacaaactatatcaggt |
17135269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 17148823 - 17148756
Alignment:
| Q |
282 |
taggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
349 |
Q |
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| T |
17148823 |
taggtgtggtcattggatgtggatggcaagttatggttggttacataaacttggcatgttattatatt |
17148756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 17134965 - 17134900
Alignment:
| Q |
280 |
tataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctatta |
345 |
Q |
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| T |
17134965 |
tataggtgtggtcattggatgtggatggcaagttatggttggttacataaacttgggatgttatta |
17134900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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