View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21616_low_11 (Length: 356)
Name: NF21616_low_11
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 12642461 - 12642175
Alignment:
| Q |
1 |
aagcattgaagaagcttccgatacactatgttttaggaattgcaagagacacaatggaacttgatgaattggaataacataatggaacatatgaatcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642461 |
aagcattgaagaagcttccgatacactatgttctaggaattgcaagagacacaatggaacttgatgaattggaataacataatggaacatatgaatcagt |
12642362 |
T |
|
| Q |
101 |
atgtgaacgaatatacaaaagaaataaatctgagaagtctcaattgatgcaatgatacgttattggatggtgtgttaaagattataaatagctacatgat |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12642361 |
atgtgaacgaatatacataagaaataaatctgagaagtctcaattgatgcaatgatacgttattggatggtgtgttaaagattataaatagctacatgat |
12642262 |
T |
|
| Q |
201 |
gttactctctttaaattaatgcgcattcacatatgtaagtagtaatatgggattatgaacaagaatttaacaatgtatctaacaaca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12642261 |
gttactctctttaaattaatgcgcattcacatatgtaagtagtaatatgggattatgaacaagaatttaacaatgtatctaataaca |
12642175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 12641983 - 12641925
Alignment:
| Q |
289 |
aaaaacatattgagtggtaatatgaagagtttaggagatatgttatggaagagtattat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12641983 |
aaaaacatattgagtggtaatatgaagagtttaggagatatattatggaagagtattat |
12641925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University