View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_low_14 (Length: 314)
Name: NF21616_low_14
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 15681095 - 15680804
Alignment:
| Q |
18 |
tctctagtatggttgtatagatatcttgcaatgtcatttcttccataaaaagcagccatagtaagaggggtcattcctttcgcacctcgaatatgtggta |
117 |
Q |
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| T |
15681095 |
tctctagtatggttgtatagatatcttgcaatgtcatttcttccataaaaagcagccatagtaagaggggtcattcctttcgcacctcgaatatgtggta |
15680996 |
T |
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| Q |
118 |
gacattcannnnnnnctctcaaaataacaacaatttgtaggtttccagatacagcagctaagcacaatgttgtgttccctttattgttttgtagttccaa |
217 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15680995 |
gacatccatttttttctctcaaaataacaacaatttgtaggtttccagatacagcagctaagcacaatgttgtgttccctttattgttttgtagttccaa |
15680896 |
T |
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| Q |
218 |
gtcttttgagtcaagtaatttcaccaactcctctacaaaatgagtatgatttgtttctgctgcaacatgtaatagtgtaccatagtcctttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15680895 |
gtcttttgagtcaagtaatttcaccaactcctctacaaaatgagtatgatttgtttctgctgcaacatgtaatagtgtaccataatcctttg |
15680804 |
T |
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