View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_low_16 (Length: 302)
Name: NF21616_low_16
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 11295800 - 11295511
Alignment:
| Q |
17 |
atgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgannnnnnngtctcttagaataagtctaaaataaatattat----- |
111 |
Q |
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| T |
11295800 |
atgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgatttttttgtctcttagaataagtctaaaataaatattatagaga |
11295701 |
T |
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| Q |
112 |
-------------gaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactattaacaaaaa-ttt |
197 |
Q |
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| T |
11295700 |
cgaatttcaatatgaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactaaaaacaaaaaattt |
11295601 |
T |
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| Q |
198 |
tagaattcaaatatttttatggaccttttacaattctcttatgtcaccgaagggtgaaagtcttagaaatgcttactacattgtagcatg |
287 |
Q |
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| T |
11295600 |
tagaattcaaatatttttatggacctttgacaattctcttatgtcactgaagggtgaaagtcttagaaatgcttactacattgtagcatg |
11295511 |
T |
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