View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21616_low_18 (Length: 274)
Name: NF21616_low_18
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 11119688 - 11119442
Alignment:
| Q |
18 |
aagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
11119688 |
aagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtag |
11119589 |
T |
|
| Q |
118 |
tggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119588 |
tggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatga |
11119489 |
T |
|
| Q |
218 |
cagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119488 |
cagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 12206175 - 12205970
Alignment:
| Q |
40 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12206175 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaa |
12206076 |
T |
|
| Q |
140 |
tgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggct |
239 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12206075 |
tgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggct |
12205976 |
T |
|
| Q |
240 |
ggggtt |
245 |
Q |
| |
|
|||||| |
|
|
| T |
12205975 |
ggggtt |
12205970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 32741389 - 32741144
Alignment:
| Q |
21 |
aagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtgg |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
|
| Q |
121 |
cggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacag |
220 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| || |
|
|
| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatag |
32741190 |
T |
|
| Q |
221 |
tgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
266 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||| ||||| |
|
|
| T |
32741189 |
tgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University