View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_low_21 (Length: 239)
Name: NF21616_low_21
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2926458 - 2926238
Alignment:
| Q |
1 |
tatacttgagcttgtatctaccaagcatttaaaatgttcttttggtggaaaatatattattagannnnnnnnnnnnnnnnngaatggtgtctctcgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2926458 |
tatacttgagcttgtatctaccaagcatttaaaatgttcttttggtggaaaatatattattagatttttcatttattttttgaatggtgtctctcgtttt |
2926359 |
T |
|
| Q |
101 |
gacccctctattttagatatgagattatatcatatttaatatgtcaatctagtacactagcctgctacaattttttcctcacataaatcttggttttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926358 |
gacccctctattttagatatgagattatatcatatttaatatgtcaatctagtacactagcctgctacaattttttcctcacataaatcttggttttact |
2926259 |
T |
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| Q |
201 |
tagagtggggagggggattta |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2926258 |
tagagtggggagggggattta |
2926238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 2921226 - 2921019
Alignment:
| Q |
3 |
tacttgagcttgtatctaccaagcatttaaaatgttcttttggtggaaaatatattattagannnnnnnnnnnnnnnnngaatggtgtctctcgttttga |
102 |
Q |
| |
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|||||| |||||||||| |||| |||||| ||||||||||||||| |||||||||||||| | ||||||||| | | |||||| |
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| T |
2921226 |
tacttgtgcttgtatctgccaaacatttataatgttcttttggtgaaaaatatattattaaattttttatttatttcttgaatggtgtgtttgattttga |
2921127 |
T |
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| Q |
103 |
cccctctattttagatatgagattatatcatatttaatatgtcaatctagtacactagcctgctacaattttttcctcacataaatcttggttttactta |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2921126 |
tccctctattttagatatgagattatatcatatttaatatgtcaatctagtacactagcctgctacaattttttcctcacataaatcttggttttactta |
2921027 |
T |
|
| Q |
203 |
gagtgggg |
210 |
Q |
| |
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|||||||| |
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| T |
2921026 |
gagtgggg |
2921019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 2960944 - 2960893
Alignment:
| Q |
3 |
tacttgagcttgtatctaccaagcatttaaaatgttcttttggtggaaaata |
54 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2960944 |
tacttgtgtttgtatctatcaagcatttaaaatgttcttttggtgaaaaata |
2960893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 2966013 - 2966067
Alignment:
| Q |
10 |
gcttgtatctaccaagcatttaaaatgttcttttggtggaaaatatattattaga |
64 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||| ||||| | |||||||| |
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| T |
2966013 |
gcttgtatctgccaagcatttaaaatgttctttttgtgaaaaatttcttattaga |
2966067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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