View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21616_low_4 (Length: 672)

Name: NF21616_low_4
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21616_low_4
NF21616_low_4
[»] chr7 (13 HSPs)
chr7 (3-656)||(37202103-37202748)
chr7 (460-604)||(25439658-25439802)
chr7 (460-604)||(28491171-28491315)
chr7 (481-618)||(45855342-45855479)
chr7 (478-560)||(13465332-13465414)
chr7 (492-656)||(25591918-25592082)
chr7 (481-600)||(27096986-27097104)
chr7 (481-600)||(27181199-27181317)
chr7 (480-656)||(34658871-34659046)
chr7 (479-542)||(5283074-5283137)
chr7 (480-592)||(29716045-29716157)
chr7 (480-564)||(14046792-14046875)
chr7 (480-564)||(14356822-14356905)
[»] chr6 (10 HSPs)
chr6 (478-656)||(29486224-29486402)
chr6 (460-604)||(1780740-1780884)
chr6 (481-618)||(33224522-33224659)
chr6 (481-616)||(904216-904352)
chr6 (528-656)||(24428618-24428746)
chr6 (479-656)||(22956590-22956766)
chr6 (479-656)||(23831626-23831802)
chr6 (481-618)||(8560084-8560222)
chr6 (481-656)||(31216433-31216609)
chr6 (480-518)||(27673842-27673880)
[»] chr5 (10 HSPs)
chr5 (478-656)||(16908792-16908968)
chr5 (483-656)||(22098888-22099060)
chr5 (460-599)||(40528260-40528399)
chr5 (483-616)||(3498677-3498810)
chr5 (480-563)||(34033839-34033922)
chr5 (460-542)||(7008765-7008849)
chr5 (481-616)||(42352925-42353061)
chr5 (480-658)||(17698669-17698842)
chr5 (480-592)||(41640271-41640382)
chr5 (546-651)||(19948993-19949098)
[»] chr8 (11 HSPs)
chr8 (478-656)||(32415666-32415844)
chr8 (479-656)||(6115084-6115261)
chr8 (479-642)||(41570189-41570352)
chr8 (478-604)||(12491440-12491566)
chr8 (481-600)||(5808853-5808971)
chr8 (481-656)||(13741478-13741652)
chr8 (481-618)||(1233747-1233884)
chr8 (481-618)||(13641103-13641240)
chr8 (480-559)||(13541645-13541725)
chr8 (480-559)||(13682748-13682828)
chr8 (553-637)||(38172954-38173038)
[»] chr4 (14 HSPs)
chr4 (460-598)||(22785884-22786022)
chr4 (481-656)||(21790525-21790699)
chr4 (465-598)||(6016913-6017046)
chr4 (478-598)||(2407029-2407149)
chr4 (480-622)||(48861760-48861901)
chr4 (493-655)||(52628054-52628216)
chr4 (483-616)||(8762822-8762955)
chr4 (481-618)||(16608569-16608706)
chr4 (480-563)||(8745945-8746028)
chr4 (498-656)||(54166106-54166264)
chr4 (575-656)||(856840-856921)
chr4 (487-580)||(48840949-48841041)
chr4 (551-616)||(5476594-5476659)
chr4 (538-622)||(17816153-17816237)
[»] scaffold0361 (1 HSPs)
scaffold0361 (483-602)||(6931-7049)
[»] chr2 (10 HSPs)
chr2 (464-598)||(45656049-45656183)
chr2 (478-604)||(16546228-16546354)
chr2 (480-658)||(38881095-38881271)
chr2 (480-563)||(4435024-4435107)
chr2 (478-599)||(26180431-26180551)
chr2 (483-616)||(35524906-35525039)
chr2 (499-563)||(39070364-39070428)
chr2 (483-616)||(8230369-8230503)
chr2 (481-538)||(10412041-10412098)
chr2 (336-401)||(10781926-10781991)
[»] chr3 (10 HSPs)
chr3 (460-598)||(20843290-20843428)
chr3 (478-604)||(40763687-40763813)
chr3 (480-622)||(16152063-16152204)
chr3 (460-602)||(3458175-3458319)
chr3 (481-618)||(19795412-19795549)
chr3 (512-618)||(35061851-35061957)
chr3 (495-600)||(29123378-29123482)
chr3 (480-592)||(11033965-11034077)
chr3 (481-587)||(36312514-36312619)
chr3 (547-601)||(40785337-40785391)
[»] scaffold0110 (1 HSPs)
scaffold0110 (483-656)||(7050-7225)
[»] chr1 (10 HSPs)
chr1 (460-592)||(29799162-29799293)
chr1 (460-604)||(30950906-30951050)
chr1 (481-616)||(21972199-21972335)
chr1 (480-622)||(23614402-23614543)
chr1 (488-651)||(47367639-47367800)
chr1 (480-563)||(11142442-11142524)
chr1 (547-618)||(29357170-29357241)
chr1 (485-580)||(19313158-19313253)
chr1 (480-567)||(10406413-10406499)
chr1 (549-604)||(50074023-50074077)
[»] scaffold0002 (1 HSPs)
scaffold0002 (490-653)||(428504-428667)
[»] scaffold1709 (1 HSPs)
scaffold1709 (480-658)||(1250-1428)
[»] scaffold0271 (1 HSPs)
scaffold0271 (496-616)||(20141-20262)
[»] scaffold0005 (1 HSPs)
scaffold0005 (483-563)||(292499-292579)
[»] scaffold0481 (1 HSPs)
scaffold0481 (480-592)||(6455-6568)


Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 3 - 656
Target Start/End: Original strand, 37202103 - 37202748
Alignment:
Q  3 gagagagatgaaacttggcatgactacactttccggtggagctaaaa-aatggatttaaatgggtatttaataccaaatataatgagaaaggagatgttg 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202103 gagagaaatgaaacttggcatgactacactttccggtggagctaaaaaaatggatttaaatgggtatttaataccaaatataatgagaaaggagatgttg 37202202  T
Q  102 aaaagtacaaggcacggctactggcaaaacaatactcccaaatacttttaacgaggtgtttgcataagtgacaagatgggatatcataagaacaatcatt 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  37202203 aaaagtacaaggcacggctagtggcaaaacaatactcccaaatacgtttaacgaggtgtttgcattagtgacaagatggaatatcataagaacaaccatt 37202302  T
Q  202 gttgtgcaaactattagaggttggagcgtataatagttagagatgaaaagtattttcctacatggagagatcacaaatacattttatgttgggaaccata 301  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202303 gttgtgcaaactattagaggttggagcgtatactagttagagatgaaaagtgttttcctacatggagagatcacaaatacattttatgttgggaaccata 37202402  T
Q  302 agggttatgtgaagaaggagagtaaggataagtctacaagttgaagaaagctttgtatggtttaaggcaagatcccaaatcttggtatagcaagattgaa 401  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37202403 agggttatgtgaagaaggatagtaaggataagtctacaagttgaagaaagctttgtatggtttaaggcaagatcccaaagcttggtatagcaagattgaa 37202502  T
Q  402 agctattttagtattttcaaaaggagggatttgagaagcttacctccaagcacgcggcggcgtagcctttccttgtcaaggggtagccttggctacccca 501  Q
    |||        |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  37202503 agc--------tattttcaaaaggagggatttgagaagcgtacctccaagcacgcgggggcgtagcctttccttgccaaggggtagccttggcta-ccca 37202593  T
Q  502 aaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaatt 601  Q
    |||||||||||||||||||||||||||||||| ||||||||||  || || ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  37202594 aaaaatatattattcttcaattggttggtatatatttatatcctgctgccccaaataataaatattaagccatctcaaacaaatttagttgtcgaaaatt 37202693  T
Q  602 aacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37202694 aacataagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 37202748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 604
Target Start/End: Complemental strand, 25439802 - 25439658
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||| |||| || ||||| |||||||    
T  25439802 ggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataa 25439703  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaaattaac 604  Q
    |||||||| ||| | ||| || ||||| ||||| |||||||||||    
T  25439702 taaatattgagctaccccgaacaaattcagttgccgaaaattaac 25439658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 604
Target Start/End: Original strand, 28491171 - 28491315
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||| |||  || ||||| |||||||    
T  28491171 ggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattgatactcggctaccccaaataa 28491270  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaaattaac 604  Q
    |||| ||| ||| |||||||| ||||| ||||| |||||||||||    
T  28491271 taaacattgagctatcccaaacaaattcagttgccgaaaattaac 28491315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 618
Target Start/End: Original strand, 45855342 - 45855479
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||||| ||||||| |||||| ||||||||    ||||| ||||||||||||||| ||| | ||||||    
T  45855342 ggggtagcccttgctaccccaaaagaaaaaatattcttgaattggtcggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 45855441  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
    ||| ||| |||||||||||||||| ||| |||||||||    
T  45855442 taagtttggttgtcgaaaattaacataaataagaaagt 45855479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 560
Target Start/End: Original strand, 13465332 - 13465414
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataat 560  Q
    |||||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||| |||| || ||||| ||||||||    
T  13465332 caaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataat 13465414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 656
Target Start/End: Original strand, 25591918 - 25592082
Alignment:
Q  492 ggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagtt 591  Q
    ||||||||||||||| |||||||||||  ||| ||||||||  || |||||||  ||||| ||||||||||||||| ||| |  ||||| || || ||||    
T  25591918 ggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccccaaataataaatattgagctactccaaacaagttcagtt 25592017  T
Q  592 gtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    | | ||||  ||| ||| |||||||||||||  |||| ||||| || |||| |||||||| ||||    
T  25592018 gccaaaaaacaacataaataagaaagtaaaaaaattattacatcattgatagatttatttgtatt 25592082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 600
Target Start/End: Original strand, 27096986 - 27097104
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||||| | ||||||||| ||||| || ||||  |||| ||||   ||||| ||||||||||||||| ||| | ||||||    
T  27096986 ggggtagcccttgctaccccaaaaaaaa-attattctttaattgattagtatctatttgtatctagctaccccaaataataaatattgagctaccccaaa 27097084  T
Q  581 taaatttagttgtcgaaaat 600  Q
     |||||| ||||||||||||    
T  27097085 caaatttggttgtcgaaaat 27097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 600
Target Start/End: Complemental strand, 27181317 - 27181199
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||||| | ||||||||| ||||| || ||||  |||| ||||   ||||| ||||||||||||||| ||| | ||||||    
T  27181317 ggggtagcccttgctaccccaaaaaaaa-attattctttaattgattagtatctatttgtatctagctaccccaaataataaatattgagctaccccaaa 27181219  T
Q  581 taaatttagttgtcgaaaat 600  Q
     |||||| ||||||||||||    
T  27181218 caaatttggttgtcgaaaat 27181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 656
Target Start/End: Original strand, 34658871 - 34659046
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||| |||||||||  ||||||  ||| |||||||||||||| |||||  |||||||| |  |||||  |||||||| | ||| ||| |  ||||    
T  34658871 aggggtagctttggctaccaaaaaaaaattat-attcttcaattggtcggtatgtatttatattccgctaccctaaataatatacattgagctactccaa 34658969  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    | || || |||||| ||||||||   ||| ||||||||||||| ||||| |||||||| |||  |||||| ||||||    
T  34658970 acaagttcagttgttgaaaattatgataaataagaaagtaaaaatattactacatgattgatcgatttatatatatt 34659046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 542
Target Start/End: Complemental strand, 5283137 - 5283074
Alignment:
Q  479 aaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatat 542  Q
    |||||||||| ||||| ||||||||||||| ||||||||| |||| ||||||||  ||||||||    
T  5283137 aaggggtagctttggcaaccccaaaaaataaattattcttgaattagttggtatgtatttatat 5283074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 592
Target Start/End: Complemental strand, 29716157 - 29716045
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttc-aattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    ||||||||| ||||||||||||||||| | |||||||||  || |||| |||||  |||| ||| || ||||| ||||||||||||||| ||| | ||||    
T  29716157 aggggtagc-ttggctaccccaaaaaaaaaattattcttttaagtggtcggtatgtatttttattcggctaccccaaataataaatattgagctacccca 29716059  T
Q  579 aataaatttagttg 592  Q
    || |||||| ||||    
T  29716058 aacaaatttcgttg 29716045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 564
Target Start/End: Original strand, 14046792 - 14046875
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaat 564  Q
    ||||||||||||||||||||| ||||| | |||||||||| | | ||||| ||  ||||||| || |||||| ||||||||||||    
T  14046792 aggggtagccttggctacccc-aaaaagaaattattcttctagttgttggaatgtatttatacccaactaccccaaataataaat 14046875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 564
Target Start/End: Original strand, 14356822 - 14356905
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaat 564  Q
    ||||||||||||||||||||| ||||| | |||||||||| | | ||||| ||  ||||||| || |||||| ||||||||||||    
T  14356822 aggggtagccttggctacccc-aaaaagaaattattcttctagttgttggaatgtatttatacccaactaccccaaataataaat 14356905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 7e-51; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 478 - 656
Target Start/End: Original strand, 29486224 - 29486402
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||| ||  ||| || ||    
T  29486224 caaggggtagccttggctaccccaaaaaatatactattcttcaattgtttggtataaaattatatctggctacctcaaataataaacatcgagctattcc 29486323  T
Q  578 aaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    ||||||||||| ||||   |||||||| ||| ||||||||||||| |||||||||||||| |||| |||||||||||||    
T  29486324 aaataaatttaattgtaagaaattaacataaataagaaagtaaaaatattaatacatgattgatagatttatttatatt 29486402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 604
Target Start/End: Complemental strand, 1780884 - 1780740
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||| |||| || ||||| || ||||    
T  1780884 ggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaatgagttggtgtaaattaatattcggctaccccatataa 1780785  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaaattaac 604  Q
    |||| ||| ||| | |||||| ||||| |||||||||||||||||    
T  1780784 taaacattgagctaccccaaacaaattcagttgtcgaaaattaac 1780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 481 - 618
Target Start/End: Original strand, 33224522 - 33224659
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||||| |||||||||||||| ||||||||    ||||| ||||||||||||||| ||| | || |||    
T  33224522 ggggtagcccttgctaccccaaaataaaaaatattcttaaattggttggtatatatttatatttagctaccccaaataataaatattgagctaccctaaa 33224621  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
     || ||| |||||||||||||||| ||| |||||||||    
T  33224622 caagtttggttgtcgaaaattaacataaataagaaagt 33224659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 616
Target Start/End: Complemental strand, 904352 - 904216
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||| ||| ||    ||||| ||||||||||||||| ||| | ||||||    
T  904352 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttagctaccccaaataataaatattgagctaccccaaa 904253  T
Q  581 taaatttag-ttgtcgaaaattaacttaagtaagaaa 616  Q
    |||| || | ||| ||||||||| | ||| |||||||    
T  904252 taaacttggtttgccgaaaattagcataaataagaaa 904216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 528 - 656
Target Start/End: Original strand, 24428618 - 24428746
Alignment:
Q  528 ggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattatt 627  Q
    ||||||||||||||||||  ||||  |||||||||| ||| |   | || ||| ||||| ||||| |||||||||   ||| | ||||||||||||||||    
T  24428618 ggtataaatttatatccggttaccctaaataataaacattgaattaccctaaacaaattcagttgccgaaaattagtataaattagaaagtaaaattatt 24428717  T
Q  628 aatacatgatggataaatttatttatatt 656  Q
    | |||||||| ||||||||||||||||||    
T  24428718 actacatgattgataaatttatttatatt 24428746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 656
Target Start/End: Complemental strand, 22956766 - 22956590
Alignment:
Q  479 aaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    ||||||||| ||||||||||| ||||||   |||||||||  ||| ||||||||  || |||||||  ||||| ||||||||||| ||| ||| | ||||    
T  22956766 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 22956667  T
Q  579 aataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    || || |||||||| | |||| |||| ||| |||||||||| ||  |||| ||||| || |||| |||||||| ||||    
T  22956666 aacaagtttagttg-ccaaaaataacataaataagaaagtagaaaaattattacatcattgatagatttatttgtatt 22956590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 479 - 656
Target Start/End: Original strand, 23831626 - 23831802
Alignment:
Q  479 aaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    ||||||||| ||||||||||| ||||||   |||||||||  ||| ||||||||  || |||||||  ||||| ||||||||||| ||| ||| | ||||    
T  23831626 aaggggtagtcttggctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctaccccaaataataaaaattgagctacccca 23831725  T
Q  579 aataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    || || |||||||| | |||| |||| ||| |||||||||| ||  |||| ||||| || |||| |||||||| ||||    
T  23831726 aacaagtttagttg-ccaaaaataacataaataagaaagtagaaaaattattacatcattgatagatttatttgtatt 23831802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 8560222 - 8560084
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattg-gttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||| | |||||||||||| | | | ||||||| ||||  ||||||||| ||||||||    | ||| ||||||||||||||| ||| | |||||    
T  8560222 ggggtagcccttgctaccccaaaagaaaaaatattcttgaattttgttggtatatatttatatttagccaccccaaataataaatattgagctaccccaa 8560123  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
    |||| ||| |||| ||||||||||| ||| |||||||||    
T  8560122 ataagtttggttgccgaaaattaacataaataagaaagt 8560084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 656
Target Start/End: Complemental strand, 31216609 - 31216433
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||||||||| ||| |||||| | | |||||||  | | |||||| |  || ||||||||||||||  |||||| ||||||| ||  | | ||||    
T  31216609 ggggtagccttggctgcccaaaaaaaaaaaatattcttatagtagttggtttgtatatatatccgactaccctaaataaaaaatattgagatacctcaaa 31216510  T
Q  581 taa-atttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
     ||  ||||||||||||||||||   ||| |||||||||||||  |||| |||||||| |||| |||||||| ||||    
T  31216509 caagttttagttgtcgaaaattagtataaataagaaagtaaaaaaattattacatgattgatagatttatttgtatt 31216433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 27673842 - 27673880
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattctt 518  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27673842 aggggtagccttggctaccccaaaaaaaatattattctt 27673880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 478 - 656
Target Start/End: Complemental strand, 16908968 - 16908792
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||| | |||    
T  16908968 caaggggcagccttggctaccccaaaaaa-atattattcttcatttggttggtatatatttatatccggctacctcaaataataaatattgagcta-ccc 16908871  T
Q  578 aaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    ||| ||||| |||||| ||| |||||| ||||||||||||||||| |||||||| ||||| |||| |||| ||||||||    
T  16908870 aaacaaattcagttgttgaatattaacataagtaagaaagtaaaaatattaatatatgattgatagatttgtttatatt 16908792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 483 - 656
Target Start/End: Original strand, 22098888 - 22099060
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaata 582  Q
    |||||| |||||||||| |||||||| || ||| |||||| ||| |||||  |||||||| || ||||| ||||||| ||||||| ||| | |||||| |    
T  22098888 ggtagctttggctacccaaaaaaataaat-atttttcaatcggtcggtatgtatttatattcggctaccccaaataaaaaatattgagctaccccaaaca 22098986  T
Q  583 aatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    | |||||||||||||||||||  ||| ||||||||||||| ||||| |||||||| |||| || ||||||||||    
T  22098987 agtttagttgtcgaaaattaagataaataagaaagtaaaaatattactacatgattgatagatatatttatatt 22099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 460 - 599
Target Start/End: Complemental strand, 40528399 - 40528260
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||| ||| ||| |||||| ||| ||||||||||  ||||||||||||| |||| ||||||||||||||||||||||| |||||| |  ||||||    
T  40528399 ggcgtagcccttcattggcaagggatagtcttggctaccttaaaaaatatattaatctttaattggttggtataaatttatattcgactatcctaaataa 40528300  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaaa 599  Q
    |||| ||| ||| | |||||  ||||| ||||| ||||||    
T  40528299 taaacattgagctaccccaagcaaattcagttgccgaaaa 40528260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 3498810 - 3498677
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaata 582  Q
    ||||||| ||||||||||||||||  |||||||||| |||  ||||||||   |||||||    ||||| ||||||| ||||||| ||| | ||||||||    
T  3498810 ggtagccatggctaccccaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctaccccaaata 3498711  T
Q  583 aatttagttgtcgaaaattaacttaagtaagaaa 616  Q
    |||||| ||||  ||||||||| ||| |||||||    
T  3498710 aatttatttgttaaaaattaacataaataagaaa 3498677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 563
Target Start/End: Original strand, 34033839 - 34033922
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| || |||||  ||| ||||| | ||||| ||| |||||||    
T  34033839 aggggtagccttggctaccccaaaaaaaatattattcttgaattagtcggtatgtattgatatctggctaccccaattaataaa 34033922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 542
Target Start/End: Original strand, 7008765 - 7008849
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctacccc--aaaaaatatattattcttcaattggttggtataaatttatat 542  Q
    |||||| |||||| |||| |||||||||||||||||||| |  |||||| ||||||||||| |||| ||||||||  ||||||||    
T  7008765 ggcgtatcctttcattgtgaaggggtagccttggctacctcaaaaaaaaaatattattcttgaatttgttggtatgtatttatat 7008849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 616
Target Start/End: Original strand, 42352925 - 42353061
Alignment:
Q  481 ggggtagccttggctaccccaaaaaa-tatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||||| ||||||| |||||| || ||||||||| ||||||||| |||||| ||| ||    ||||  ||||||||||||||| ||| | |||||    
T  42352925 ggggtagcctttgctacccaaaaaaaataaattattcttgaattggttg-tataaaattacatttagctactccaaataataaatattgagctaccccaa 42353023  T
Q  580 ataaatttag-ttgtcgaaaattaacttaagtaagaaa 616  Q
    ||||| || | ||||||||||||| | ||| |||||||    
T  42353024 ataaacttggtttgtcgaaaattagcataaataagaaa 42353061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 658
Target Start/End: Complemental strand, 17698842 - 17698669
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    |||||||||||| ||||||  |||||| ||||| ||    || ||||||||||  |||| ||| ||  || ||||||||||||||||| ||| |||||||    
T  17698842 aggggtagcctttgctaccaaaaaaaaaatatttttg---aagtggttggtatgtatttttattcggttatctcaaataataaatattgagctatcccaa 17698746  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatttg 658  Q
    | |||||| |||| | ||||||| | ||| ||| |||||||||  |||| |||| ||| |||| |||||||| ||||||    
T  17698745 acaaatttcgttg-caaaaattagcataaataataaagtaaaa-aattactacaagattgatagatttatttgtatttg 17698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 592
Target Start/End: Complemental strand, 41640382 - 41640271
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||  ||| |   |||||| | ||| |||||||||||||||| ||| ||  | || ||    
T  41640382 aggggtagccttggctatcccaaaaaa-atattattcttgaattgactgggaagtatttatcttcgattacctcaaataataaacattgagttaccctaa 41640284  T
Q  580 ataaatttagttg 592  Q
    |||| ||||||||    
T  41640283 ataagtttagttg 41640271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 651
Target Start/End: Complemental strand, 19949098 - 19948993
Alignment:
Q  546 actacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaat 645  Q
    |||||| | ||||||||| ||| ||| ||  ||||||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||| || ||||  |    
T  19949098 actaccccgaataataaacattgagctatttcaaataagtttagttgtcgaaaattaacataaataaaaaattaaaaaaattactacataattgataggt 19948999  T
Q  646 ttattt 651  Q
    ||||||    
T  19948998 ttattt 19948993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 478 - 656
Target Start/End: Original strand, 32415666 - 32415844
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | | |||| |||||||||| ||| ||  | |||    
T  32415666 caaggggtaactttggctacccaaaaaaatatattattcttcaattggttggtataaacttatatctggcaaccttaaataataaacattgagttacccc 32415765  T
Q  578 aaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    ||||||||| ||||||| ||||||||  ||| ||||||||||||| ||||| ||||| || |||| |||||||||||||    
T  32415766 aaataaattaagttgtcaaaaattaatataaataagaaagtaaaaatattactacatcattgatagatttatttatatt 32415844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 479 - 656
Target Start/End: Complemental strand, 6115261 - 6115084
Alignment:
Q  479 aaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    |||||||||||||||||||||||||||| |||||||||||  ||| ||||||||  || |||||||  |||||  |||||||||| ||| | | | ||||    
T  6115261 aaggggtagccttggctaccccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctaccataaataataaacattgaactacccca 6115162  T
Q  579 aataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    || || || ||||| | |||| |||| ||| |||||||||||||  |||| ||||| || |||| |||||||| ||||    
T  6115161 aacaagttcagttgccaaaaaataacataaataagaaagtaaaaaaattattacatcattgatagatttatttgtatt 6115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 642
Target Start/End: Original strand, 41570189 - 41570352
Alignment:
Q  479 aaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    |||||||||||||||||||||||||||  ||||| ||||| | ||||| |||||  |||||||| |  ||||| ||||||||||||||| ||| | ||||    
T  41570189 aaggggtagccttggctaccccaaaaacaatatttttcttgagttggtaggtatgtatttatattcagctaccccaaataataaatattgagctacccca 41570288  T
Q  579 aataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggata 642  Q
    || || || ||||| ||||||||  | ||  ||||||||| |||  |||| |||||||| ||||    
T  41570289 aaaaagttcagttgccgaaaatttgcatatataagaaagttaaaaaattattacatgattgata 41570352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 604
Target Start/End: Original strand, 12491440 - 12491566
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||  ||||||  ||||| |||| || ||||| ||||||| ||| ||| |||   |||    
T  12491440 caaggggtagccttggctactccaaaaaatatattaatctttaataagttggtgcaaattaatattcggctaccccaaataacaaacattgagctgcccc 12491539  T
Q  578 aaataaatttagttgtcgaaaattaac 604  Q
    ||| ||||| ||||| |||||||||||    
T  12491540 aaacaaattcagttgccgaaaattaac 12491566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 600
Target Start/End: Complemental strand, 5808971 - 5808853
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||||| | ||||||||| ||||| || ||||  |||| ||||   ||||| ||||||||||||||| ||| | ||||||    
T  5808971 ggggtagcccttgctaccccaaaaaaaa-attattctttaattgattagtatctatttgtatctagctaccccaaataataaatattgagctaccccaaa 5808873  T
Q  581 taaatttagttgtcgaaaat 600  Q
    ||||||| ||||||||||||    
T  5808872 taaatttggttgtcgaaaat 5808853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 656
Target Start/End: Complemental strand, 13741652 - 13741478
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||  | |||||||||||||| ||||||||    ||||||||||||||||||||| ||| | |||||     
T  13741652 ggggtagcccttgctaccccaaaagaaaaaatatttatgaattggttggtatatatttatatttagctacctcaaataataaatattgagctaccccaag 13741553  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
     || ||| |||| ||||||||||| ||| ||||||||| |||  | || ||||| || |||| |||||||||||||    
T  13741552 caagtttggttgccgaaaattaacataaataagaaagtgaaa-aagtactacatcattgatagatttatttatatt 13741478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 1233884 - 1233747
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||| | |||||||||||||| ||||||||    ||||| ||||||||||||||| ||| | |||||     
T  1233884 ggggtagcccttgctaccccaaaagaaaaaatattcatgaattggttggtatatatttatatttagctaccccaaataataaatattgagctaccccaag 1233785  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
     || ||| |||| ||||||||||| ||| |||||||||    
T  1233784 caagtttggttgccgaaaattaacataaataagaaagt 1233747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 13641240 - 13641103
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||  | |||||||||||||| ||||||||    ||||||||||||||||||||| ||| | |||||     
T  13641240 ggggtagcccttgctaccccaaaagaaaaaatatttatgaattggttggtatatatttatatttagctacctcaaataataaatattgagctaccccaag 13641141  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
     || ||| |||| ||||||||||| ||| |||||||||    
T  13641140 caagtttggttgccgaaaattaacataaataagaaagt 13641103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 559
Target Start/End: Complemental strand, 13541725 - 13541645
Alignment:
Q  480 aggggtagccttggctaccc-caaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||||||||||||||  |||||| ||||||||||| || |||| |||||  | || |||||| ||||| |||||||    
T  13541725 aggggtagccttggctacccaaaaaaaaaatattattcttaaagtggtcggtatgtacttgtatccggctaccccaaataa 13541645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 559
Target Start/End: Original strand, 13682748 - 13682828
Alignment:
Q  480 aggggtagccttggctaccc-caaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||||||||||||||  |||||| ||||||||||| || |||| |||||  | || |||||| ||||| |||||||    
T  13682748 aggggtagccttggctacccaaaaaaaaaatattattcttaaagtggtcggtatgtacttgtatccggctaccccaaataa 13682828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 637
Target Start/End: Complemental strand, 38173038 - 38172954
Alignment:
Q  553 caaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgat 637  Q
    ||||||||||| ||| ||| | |||||| || || | |||| |||||||||  ||| ||||||||||||| ||||| ||||||||    
T  38173038 caaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaataagaaagtaaaaatattattacatgat 38172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 460 - 598
Target Start/End: Original strand, 22785884 - 22786022
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | || ||||| |||||||    
T  22785884 ggcgtagcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatctttaattggttggtataaatttattttcggctaccccaaataa 22785983  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaa 598  Q
    |||| ||| ||| | |||||| ||||| |||||||||||    
T  22785984 taaacattgagctaccccaaacaaattcagttgtcgaaa 22786022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 481 - 656
Target Start/End: Original strand, 21790525 - 21790699
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    |||||||||| || || |||||||||||||||||||||||| | |||| ||||||||||||| | ||||||  |||||||||||||| ||||| |  |||    
T  21790525 ggggtagcct-ggttatcccaaaaaatatattattcttcaaatagttgttataaatttatattcaactaccctaaataataaatattgagccaccataaa 21790623  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    |||||| ||||| ||||||||||| ||| ||||||| | ||| ||||| |||||||| ||| ||||||||||||||    
T  21790624 taaattcagttgccgaaaattaacataaataagaaatttaaaatattactacatgattgattaatttatttatatt 21790699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 465 - 598
Target Start/End: Complemental strand, 6017046 - 6016913
Alignment:
Q  465 agcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaat 564  Q
    |||| ||| ||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |  | ||||| |||||||||||     
T  6017046 agcccttcattggcaaggggtagccttggctaccccaaaaattatattaatctttaattggttggtataaatttatttttggctaccccaaataataaac 6016947  T
Q  565 attaagccatcccaaataaatttagttgtcgaaa 598  Q
    ||| ||| | |||||| ||||| |||||||||||    
T  6016946 attgagctaccccaaacaaattcagttgtcgaaa 6016913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 598
Target Start/End: Original strand, 2407029 - 2407149
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| | |  ||||| ||||||||||| ||| ||| | |||    
T  2407029 caaggggtagccttggctacctcaaaaaatatattaatctttaattggttggtataaatttattttcagctaccccaaataataaacattgagctacccc 2407128  T
Q  578 aaataaatttagttgtcgaaa 598  Q
    || |||||| |||||||||||    
T  2407129 aactaaattcagttgtcgaaa 2407149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 48861760 - 48861901
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  | |||||| |||||||| || ||||| ||||||||||| ||||||| | |||||    
T  48861760 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatattcggctaccccaaataataaacattaagctaccccaa 48861859  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaa 622  Q
    |||| |||||||| | ||||||| | ||| ||| |||||||||    
T  48861860 ataagtttagttg-caaaaattagcataaataataaagtaaaa 48861901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 493 - 655
Target Start/End: Original strand, 52628054 - 52628216
Alignment:
Q  493 gctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttg 592  Q
    ||||||||||||||   ||||||||||||| ||| |||||  ||||||||||| ||||||||||||||||| ||| ||| | |||||| || || | |||    
T  52628054 gctaccccaaaaaaataattattcttcaatcggtcggtatgtatttatatccggctacctcaaataataaacattgagctaccccaaacaagttcaattg 52628153  T
Q  593 tcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatat 655  Q
    | |||||||||  ||| |||||| |||||| ||||| |||||||| |||| || ||| |||||    
T  52628154 ttgaaaattaagataaataagaaggtaaaaatattattacatgattgatatatatatatatat 52628216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 8762955 - 8762822
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaata 582  Q
    ||||||| ||||||||||||||||  |||| ||||| |||  |||||||||  |||||||    ||||| ||||||| ||||||| ||| | ||||||||    
T  8762955 ggtagccatggctaccccaaaaaaagtattgttcttgaatatgttggtatatttttatatttagctaccccaaataaaaaatatttagctaccccaaata 8762856  T
Q  583 aatttagttgtcgaaaattaacttaagtaagaaa 616  Q
    |||||| ||||  ||||||||| ||| |||||||    
T  8762855 aatttatttgttaaaaattaacataaataagaaa 8762822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 16608706 - 16608569
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||| | |||||||||||||| ||||||||    ||||| ||||||||||||||| ||| | ||||||    
T  16608706 ggggtagcccttgctaccccaaaagaaaaaatattcatgaattggttggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 16608607  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
     || ||| |||  ||||||||||| ||| |||||||||    
T  16608606 aaagtttggttaccgaaaattaacataaataagaaagt 16608569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 563
Target Start/End: Complemental strand, 8746028 - 8745945
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    |||||||||||||||||||||| |||| ||||||| ||| || |||| |||||  | ||||||| | |||||||||||||||||    
T  8746028 aggggtagccttggctaccccagaaaaaatattatacttaaagtggtcggtatgtacttatatctggctacctcaaataataaa 8745945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 656
Target Start/End: Complemental strand, 54166264 - 54166106
Alignment:
Q  498 cccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtcgaa 597  Q
    ||||||||| | ||||||||||||| ||| ||||   |||| |||||  ||| | ||||||||||| ||| ||| | | |||| || || ||||||| ||    
T  54166264 cccaaaaaaaaaattattcttcaatcggtcggtaagtatttttatccagctatcccaaataataaacattgagctacctcaaacaagttcagttgtctaa 54166165  T
Q  598 aattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    |||||   ||| ||||||||||||| ||||| |||||||| |||| ||||  |||||||    
T  54166164 aattaggataaataagaaagtaaaaatattactacatgattgatagattttattatatt 54166106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 656
Target Start/End: Complemental strand, 856921 - 856840
Alignment:
Q  575 cccaaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
    |||||| || || |||||||||||||||   ||| ||||||||||||| ||||| |||||||| | || |||||||||||||    
T  856921 cccaaacaagttcagttgtcgaaaattatgataaataagaaagtaaaaatattactacatgattggtagatttatttatatt 856840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 580
Target Start/End: Original strand, 48840949 - 48841041
Alignment:
Q  487 gccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    |||||||||||||||||||| | ||||||||| |||| || |||||  ||||||||||| |||||  |||||||||| ||| ||| | ||||||    
T  48840949 gccttggctaccccaaaaaaaa-attattctttaattcgtcggtatgtatttatatccggctaccctaaataataaacattgagctaccccaaa 48841041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Complemental strand, 5476659 - 5476594
Alignment:
Q  551 ctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaa 616  Q
    ||||||||| ||||||| ||| | |||||||||||||| ||||  ||||||||| ||| |||||||    
T  5476659 ctcaaataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaataagaaa 5476594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 17816237 - 17816153
Alignment:
Q  538 tatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaagtaaaa 622  Q
    |||||||||||| | |||||||||||| || ||| || | |||||| |||||||||  ||||||| | ||| | |||||||||||    
T  17816237 tatatccgactatcccaaataataaattttgagctattctaaataagtttagttgtaaaaaattagcataaatgagaaagtaaaa 17816153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 483 - 602
Target Start/End: Original strand, 6931 - 7049
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaata 582  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |  |||||||||||||| ||| | |||||| |    
T  6931 ggtagccttggctacccccaaaaatatattattcttcaattgtttggtataaatttatatccggctaacctaaataataaatattgagcta-cccaaaca 7029  T
Q  583 aatttagttgtcgaaaatta 602  Q
    ||||||||||||||||||||    
T  7030 aatttagttgtcgaaaatta 7049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 598
Target Start/End: Complemental strand, 45656183 - 45656049
Alignment:
Q  464 tagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | || ||||| |||||||||||    
T  45656183 tagcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatttttaattggttggtataaatttattttcggctaccccaaataataaa 45656084  T
Q  564 tattaagccatcccaaataaatttagttgtcgaaa 598  Q
    |||| ||| | |||||| ||||| |||||||||||    
T  45656083 tattgagctaccccaaacaaattcagttgtcgaaa 45656049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 478 - 604
Target Start/End: Original strand, 16546228 - 16546354
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    |||||| |||||||||||||||||||||||||||||  ||| |||  |||||| ||||||||||| || ||||| ||||||||||| ||| ||| | ||     
T  16546228 caagggttagccttggctaccccaaaaaatatattaaactttaataagttggtgtaaatttatattcggctaccccaaataataaacattgagctaccct 16546327  T
Q  578 aaataaatttagttgtcgaaaattaac 604  Q
    ||| ||||| ||||| |||||||||||    
T  16546328 aaacaaattcagttgccgaaaattaac 16546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 658
Target Start/End: Original strand, 38881095 - 38881271
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||||||| |||||  |||||| ||||||||||| ||||| |  || || |||||||| |||||| || |||||||||||||| | | ||| |||    
T  38881095 aggggtagccttgcctaccaaaaaaaa-atattattcttgaattgataagtgtatatttatattcgactatcttaaataataaatattgaactatcacaa 38881193  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatttg 658  Q
    ||||||||| ||||  ||||||| | ||| ||| |||||||||  || | || | ||| ||||||||||||||||||||    
T  38881194 ataaatttaattgt-aaaaattagcataaataataaagtaaaaaaatcactataagattgataaatttatttatatttg 38881271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 563
Target Start/End: Original strand, 4435024 - 4435107
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    ||||||||||  |||||||| |||||||||||||||||| ||||||| |||||  |||||||||||  ||||| ||||||||||    
T  4435024 aggggtagccaaggctacccaaaaaaatatattattcttgaattggtcggtatgtatttatatccggttaccttaaataataaa 4435107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 599
Target Start/End: Original strand, 26180431 - 26180551
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    ||||| |||||||||||||||| ||||||||||||| | || |||| ||||||||  |||||||||   |||| |||||||||||||||| ||| | | |    
T  26180431 caaggagtagccttggctaccc-aaaaaatatattaattttgaattagttggtatgtatttatatctagctacttcaaataataaatattgagctacctc 26180529  T
Q  578 aaataaatttagttgtcgaaaa 599  Q
    ||| || |||||||||| ||||    
T  26180530 aaacaagtttagttgtccaaaa 26180551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 35525039 - 35524906
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaata 582  Q
    ||||||| ||||||||||||||||  |||| ||||| |||  ||||||||   |||||||    ||||| ||||||| ||||||| ||| | ||||||||    
T  35525039 ggtagccatggctaccccaaaaaaattatttttcttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctaccccaaata 35524940  T
Q  583 aatttagttgtcgaaaattaacttaagtaagaaa 616  Q
    |||||| ||||  ||||||||| ||| |||||||    
T  35524939 aatttatttgttaaaaattaacataaataagaaa 35524906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 39070428 - 39070364
Alignment:
Q  499 ccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    ||||||||||||||| |||| |||  |||||| ||||||||||| || |||||||||||||||||    
T  39070428 ccaaaaaatatattaatctttaataagttggtgtaaatttatattcggctacctcaaataataaa 39070364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 8230503 - 8230369
Alignment:
Q  483 ggtagccttggctaccccaaaaaata-tattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaat 581  Q
    ||||||| |||||||||||||||| | |||||||||| |||  ||||||||   |||||||    ||||| ||||||| ||||||| ||| | ||||||     
T  8230503 ggtagccatggctaccccaaaaaaaagtattattcttgaatatgttggtatgtttttatatttagctaccccaaataaaaaatatttagctaccccaaac 8230404  T
Q  582 aaatttagttgtcgaaaattaacttaagtaagaaa 616  Q
    ||||||| ||||  ||||||||| ||| |||||||    
T  8230403 aaatttatttgttaaaaattaacataaataagaaa 8230369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 10412041 - 10412098
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaattt 538  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||   ||||||||||||    
T  10412041 ggggtagcctttgctaccccaaaaaataaattattcttgaattaagtggtataaattt 10412098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 10781991 - 10781926
Alignment:
Q  336 tacaagttgaagaaagctttgtatggtttaaggcaagatcccaaatcttggtatagcaagattgaa 401  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| | | |||||||||| || ||||||    
T  10781991 tacaagttgaaaaaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaa 10781926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 460 - 598
Target Start/End: Complemental strand, 20843428 - 20843290
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | || ||||| |||||||    
T  20843428 ggcgtagccctttattggcaaggggtagccttggctaccccaaaaaatatattaatatttaattggttggtataaatttattttcggctaccccaaataa 20843329  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaa 598  Q
    |||| ||| ||| | |||||| ||||| |||||||||||    
T  20843328 taaacattgagctaccccaaacaaattcagttgtcgaaa 20843290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 478 - 604
Target Start/End: Original strand, 40763687 - 40763813
Alignment:
Q  478 caaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccc 577  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||  |||||| |||||| |||| || ||||| ||||||||||| ||| ||| |||||    
T  40763687 caagaggtagccttggttaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcggctaccccaaataataaacattgagctatccc 40763786  T
Q  578 aaataaatttagttgtcgaaaattaac 604  Q
    ||| ||||| |||||||||||||||||    
T  40763787 aaacaaattcagttgtcgaaaattaac 40763813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 16152063 - 16152204
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  | |||||| ||||||||||| ||||| ||||||||||| ||| ||| | |||||    
T  16152063 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccccaaataataaacattgagctaccccaa 16152162  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaa 622  Q
    |||| |||||||| | ||||||| | ||| ||| |||||||||    
T  16152163 ataagtttagttg-caaaaattagcataaataataaagtaaaa 16152204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 460 - 602
Target Start/End: Complemental strand, 3458319 - 3458175
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||| ||| ||| |||  ||||||||||||||||| ||||||||||||| |||| ||||| ||||| ||||||||||| || ||||| || ||||    
T  3458319 ggcgtagcccttcattggcaacaggtagccttggctacccaaaaaaatatattaatctttaattgtttggtctaaatttatattcggctaccccatataa 3458220  T
Q  560 taaatattaagccat--cccaaataaatttagttgtcgaaaatta 602  Q
    |||||||| ||  ||  ||||| |||||| ||||| |||||||||    
T  3458219 taaatattgagatataccccaagtaaattcagttgccgaaaatta 3458175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 481 - 618
Target Start/End: Original strand, 19795412 - 19795549
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||| | |||||||||||| | | | ||||||| |||||||||||||| ||||||||    ||||  ||||||||||||||| ||| | ||||||    
T  19795412 ggggtagcccttgctaccccaaaataaaaaatattcttgaattggttggtatatatttatatttagctactccaaataataaatattgagctaccccaaa 19795511  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
     || ||| |||||||||||||||| ||| |||||||||    
T  19795512 caagtttggttgtcgaaaattaacataaataagaaagt 19795549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 618
Target Start/End: Original strand, 35061851 - 35061957
Alignment:
Q  512 tattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagta 611  Q
    ||||||| |||||||||||||| ||||||||    ||||||||||||||||||||| ||| |  | |||||| ||| |||||||||||||||| ||| ||    
T  35061851 tattcttgaattggttggtatatatttatatttagctacctcaaataataaatattgagctactctaaataagtttggttgtcgaaaattaacataaata 35061950  T
Q  612 agaaagt 618  Q
    |||||||    
T  35061951 agaaagt 35061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 600
Target Start/End: Original strand, 29123378 - 29123482
Alignment:
Q  495 taccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttagttgtc 594  Q
    |||||||||||| | ||||||||| ||||| || ||||  |||| ||||   ||||| ||||||||||||||| ||| ||||||||||||||| ||||||    
T  29123378 taccccaaaaaaaa-attattctttaattgattagtatctatttgtatctagctaccccaaataataaatattgagctatcccaaataaatttcgttgtc 29123476  T
Q  595 gaaaat 600  Q
    ||||||    
T  29123477 gaaaat 29123482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 480 - 592
Target Start/End: Complemental strand, 11034077 - 11033965
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    ||||||||||||||||| || |||||| |||||||| || |  |||| |||||  |||||||||||  |||||||||||||||| ||| ||| | |||||    
T  11034077 aggggtagccttggctatccgaaaaaaaatattatttttgatgtggtcggtatgtatttatatccggttacctcaaataataaacattgagctaccccaa 11033978  T
Q  580 ataaatttagttg 592  Q
    | |||| ||||||    
T  11033977 acaaatatagttg 11033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 587
Target Start/End: Complemental strand, 36312619 - 36312514
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||||| ||||| | |||| ||| ||||||||| ||||||||| |||||| ||| ||    ||||||||||||||||||||||||| | | ||||    
T  36312619 ggggtagcctttgctactc-aaaatataaattattcttgaattggttgatataaaattacatttagctacctcaaataataaatattaagctacctcaaa 36312521  T
Q  581 taaattt 587  Q
    |||||||    
T  36312520 taaattt 36312514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 601
Target Start/End: Original strand, 40785337 - 40785391
Alignment:
Q  547 ctacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaatt 601  Q
    ||||||||||||||||||||| ||| | | ||||||||||| |||| ||||||||    
T  40785337 ctacctcaaataataaatattgagctacctcaaataaatttggttgccgaaaatt 40785391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 656
Target Start/End: Complemental strand, 7225 - 7050
Alignment:
Q  483 ggtagccttggctaccccaaaaaatata--ttattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    |||||| |||||||| |||||||| |||  |||||||||||| ||| |||||  ||||||||||||||||| ||||||||||| ||| ||  | ||||||    
T  7225 ggtagctttggctactccaaaaaaaataaattattcttcaatcggtcggtatgtatttatatccgactaccccaaataataaacattgagttaccccaaa 7126  T
Q  581 taaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatt 656  Q
     || || ||||||||||||||||  ||| ||| ||||||||| ||||| ||| |||| |||| |||||||||||||    
T  7125 caagttcagttgtcgaaaattaagataaataaaaaagtaaaaatattattacgtgattgatagatttatttatatt 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 460 - 592
Target Start/End: Complemental strand, 29799293 - 29799162
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    ||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| || ||||| |||||||    
T  29799293 ggcgtagcccttcattggcaaggggtagccttggctaccc-aaaaaatatattaatctttaattggttggtataaatttatattcggctaccccaaataa 29799195  T
Q  560 taaatattaagccatcccaaataaatttagttg 592  Q
    |||| ||| ||  |  ||||||||||| |||||    
T  29799194 taaacattgagttactccaaataaattcagttg 29799162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 460 - 604
Target Start/End: Complemental strand, 30951050 - 30950906
Alignment:
Q  460 ggcgtagcctttccttgtcaaggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataa 559  Q
    |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||| |||||| |||| ||| |||| |||||||    
T  30951050 ggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatattcgagtaccccaaataa 30950951  T
Q  560 taaatattaagccatcccaaataaatttagttgtcgaaaattaac 604  Q
    |||| ||| |||   |||||| ||||| ||||| |||||||||||    
T  30950950 taaacattgagcatccccaaacaaattcagttgccgaaaattaac 30950906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 481 - 616
Target Start/End: Original strand, 21972199 - 21972335
Alignment:
Q  481 ggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||| ||| ||   |||||| ||||||||||||||| ||| | ||||||    
T  21972199 ggggtagcctttgctaccccaaaaaataaattattcttgaattggttgatataaaattacatttaactaccccaaataataaatattgagctaccccaaa 21972298  T
Q  581 taaatttag-ttgtcgaaaattaacttaagtaagaaa 616  Q
    |||| || | ||| ||||||||| | ||| |||||||    
T  21972299 taaacttggtttgccgaaaattagcataaataagaaa 21972335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 480 - 622
Target Start/End: Original strand, 23614402 - 23614543
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaa 579  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  | |||||| ||||||||||| |||||  |||||||||| ||| ||| | | |||    
T  23614402 aggggtagccttggctaccccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctaccctaaataataaacattgagctacctcaa 23614501  T
Q  580 ataaatttagttgtcgaaaattaacttaagtaagaaagtaaaa 622  Q
    |||| |||||||| | ||||||| | ||| ||| |||||||||    
T  23614502 ataagtttagttg-caaaaattagcataaataataaagtaaaa 23614543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 488 - 651
Target Start/End: Original strand, 47367639 - 47367800
Alignment:
Q  488 ccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaattt 587  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||  ||||||||    ||||||||||||||||| ||| ||| | |||||| | ||      
T  47367639 ccttggctaccccaaaaaatat-ttattgttgaattagttggtatgtatttatattttgctacctcaaataataaacattgagctaccccaaacatatcc 47367737  T
Q  588 agttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttattt 651  Q
    | ||||||||||||| | ||  |||||||||||||  |||| |||||||| |||| ||||||||    
T  47367738 aattgtcgaaaattagcatatataagaaagtaaaa-aattactacatgattgatagatttattt 47367800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 563
Target Start/End: Original strand, 11142442 - 11142524
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    ||||||||||||||||||||||||||| ||||||| ||| || |||| |||||  | |||||| || |||||||||||||||||    
T  11142442 aggggtagccttggctaccccaaaaaa-atattatacttaaagtggtcggtatgtacttatattcggctacctcaaataataaa 11142524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 618
Target Start/End: Original strand, 29357170 - 29357241
Alignment:
Q  547 ctacctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaacttaagtaagaaagt 618  Q
    ||||| ||||||||||||||| ||| | ||||||||| |||||||| ||||||||||| ||| |||||||||    
T  29357170 ctaccccaaataataaatattgagctaccccaaataagtttagttgccgaaaattaacataaataagaaagt 29357241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 19313158 - 19313253
Alignment:
Q  485 tagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaa 580  Q
    |||||||||||||||||||||  | ||||||||| || |||| |||||  || | |||||| ||||| ||||||||||||||| ||| | ||||||    
T  19313158 tagccttggctaccccaaaaataaaattattcttgaagtggtcggtatgtatatttatccggctaccccaaataataaatattgagctaccccaaa 19313253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 567
Target Start/End: Complemental strand, 10406499 - 10406413
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatatt 567  Q
    ||||||||||||||||| ||||||||| | | ||||||| || |||| |||||  |||| |||||| ||||  |||||||||||||||    
T  10406499 aggggtagccttggcta-cccaaaaaaaaaaatattcttgaagtggtcggtatgtatttttatccggctactccaaataataaatatt 10406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 604
Target Start/End: Complemental strand, 50074077 - 50074023
Alignment:
Q  549 acctcaaataataaatattaagccatcccaaataaatttagttgtcgaaaattaac 604  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||| ||||||||||    
T  50074077 acctcaaataa-aaatatttagctatcccaaataaatttatttgttgaaaattaac 50074023  T

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Target: scaffold0002 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 490 - 653
Target Start/End: Complemental strand, 428667 - 428504
Alignment:
Q  490 ttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttag 589  Q
    ||||||||||||||| ||||| | |||||||||| | ||||||| | ||||||||  ||||||||||||||||| ||| ||| | || ||||||||| ||    
T  428667 ttggctaccccaaaatatatacttttcttcaatttgctggtatataattatatccagctacctcaaataataaacattgagctaccctaaataaattcag 428568  T
Q  590 ttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttat 653  Q
    ||||| ||||||||  ||| ||| ||||||||| ||| |||||||||| |||  ||||||||||    
T  428567 ttgtcaaaaattaatataaataataaagtaaaaatatcaatacatgattgatggatttatttat 428504  T

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Target: scaffold1709 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 658
Target Start/End: Original strand, 1250 - 1428
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatata-ttattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    |||||||||||||||||||| |||||| ||| |||||||| || |||| |||||  |||| |||||| ||||  ||||||||||||||| | | | ||||    
T  1250 aggggtagccttggctacccaaaaaaaaataattattctttaagtggtcggtatgtatttttatccggctactccaaataataaatattgaactacccca 1349  T
Q  579 aataaatttagttgtcgaaaattaacttaagtaagaaagtaaaattattaatacatgatggataaatttatttatatttg 658  Q
    ||||||||| |||| | |||||||||  || |||  ||||||||  |||| |||| ||| |||| |||||||| ||||||    
T  1350 aataaatttcgttg-caaaaattaacacaaataatgaagtaaaaaaattactacaagattgatagatttatttgtatttg 1428  T

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Target: scaffold0271 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 616
Target Start/End: Original strand, 20141 - 20262
Alignment:
Q  496 accccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatcccaaataaatttag-ttgtc 594  Q
    ||||||||||||| |||||| || |||||||||||||||| ||| ||    ||||  ||||||||||||||| ||| | ||||||||||||| | |||||    
T  20141 accccaaaaaataaattatttttgaattggttggtataaaattacatttagctactccaaataataaatattgagctaccccaaataaatttggtttgtc 20240  T
Q  595 gaaaattaacttaagtaagaaa 616  Q
    |||||||| | ||| |||||||    
T  20241 gaaaattagcataaataagaaa 20262  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 563
Target Start/End: Complemental strand, 292579 - 292499
Alignment:
Q  483 ggtagccttggctaccccaaaaaatatattattcttcaattggttggtataaatttatatccgactacctcaaataataaa 563  Q
    |||||||||||||||||||| ||| ||||||| ||| || |||| |||||  | ||||||||| ||| | |||||||||||    
T  292579 ggtagccttggctaccccaagaaaaatattatacttgaagtggtcggtatgtacttatatccggctatcccaaataataaa 292499  T

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Target: scaffold0481 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 592
Target Start/End: Original strand, 6455 - 6568
Alignment:
Q  480 aggggtagccttggctaccccaaaaaatatat-tattcttcaattggttggtataaatttatatccgactacctcaaataataaatattaagccatccca 578  Q
    |||||||||||||||||||| |||||| | |  | ||||| || |||| |||||  |||| ||| || ||||||||||||||||||||| ||| |  |||    
T  6455 aggggtagccttggctacccaaaaaaaaaaaaattttctttaagtggtcggtatgtatttttattcggctacctcaaataataaatattgagctactcca 6554  T
Q  579 aataaatttagttg 592  Q
    || |||||| ||||    
T  6555 aacaaatttcgttg 6568  T

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