View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21616_low_6 (Length: 499)

Name: NF21616_low_6
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21616_low_6
NF21616_low_6
[»] chr1 (4 HSPs)
chr1 (1-480)||(50531893-50532372)
chr1 (20-296)||(50533612-50533898)
chr1 (286-432)||(50534305-50534452)
chr1 (297-437)||(50538535-50538676)
[»] chr8 (1 HSPs)
chr8 (367-420)||(44902735-44902788)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 50531893 - 50532372
Alignment:
Q  1 aggatattgaatgaagggtatgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50531893 aggatattgaatgaagggtatgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaacc 50531992  T
Q  101 atggcagagattgattcaagcaaaccaactgtcaatggtgccaaacccttacagcctaaaagcagcacatagtttgtttcacctttaacgttatataaac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  50531993 atggcagagattgattcaagcaagccaactgtcaatggtgccaaacccttacaacctaaaagcagcacatagtttgtttcacctttaacgttatataaag 50532092  T
Q  201 tttacaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaaactatagatataatatatatgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50532093 tttacaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaagctatagatataatatatatgta 50532192  T
Q  301 aaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgatatttta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50532193 aaaattgtattaatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgatatttta 50532292  T
Q  401 cttaaaagtcgatacaaaccgtaacataaacacctatgttacatatgttttatggtggataacgtttcttataaatggat 480  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50532293 cttaaaagtcaatacaaaccgtaacataaacacctatgttacatatgttttatggtggataatgtttcttataaatggat 50532372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 50533612 - 50533898
Alignment:
Q  20 atgaataaaacccaggtgtttaatttcaatggttggcttcatgtgaaaattcaaagttgaaaccgtaaccgaccggaaaccatggcagagattgattcaa 119  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    |||    
T  50533612 atgaataaaaccggggtatttaatttcaatggttggcttcatgtgaaaattcaaggt-gaaaccctaaccgaccggaa-ccatggcagagatt----caa 50533705  T
Q  120 gcaaaccaactgtcaatggtgccaaacccttacagcctaaaag-----------cagcacatagtttgtttcacctttaacgtta-----tataaacttt 203  Q
    |||| |||||||| || |||| ||||||  |||| ||||||||           |||||||||||||||||||||||||||||||     || ||| ||     
T  50533706 gcaagccaactgtgaaaggtgacaaacctatacaacctaaaagtttatgtatatcagcacatagtttgtttcacctttaacgttacgttataaaaagtta 50533805  T
Q  204 acaagcctgggtttgtatcgacaaagaatctatcctctaacttgttttatttgagccattggtttatgtcaaaaactatagatataatatata 296  Q
    ||||| |||||||||||| |||||||||| ||||| |||||||||| | ||| |||||| |||||||||| |||| |||||||||||||||||    
T  50533806 acaagtctgggtttgtattgacaaagaatatatcccctaacttgttctctttaagccatgggtttatgtccaaaaatatagatataatatata 50533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 50534305 - 50534452
Alignment:
Q  286 tataatatatatgtaaaaattgtattaatccgatcggattcaaactccattg-aaaaaacaatctaatctcgaccaaattgcatgttattttatttttga 384  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||| |||| ||    
T  50534305 tataatatatatgtaaaaattgaattaatccaataggattcaaactccgttgtaaaaaacaatccaatctcaaccaaattgcatgatattttgttttaga 50534404  T
Q  385 atcgaatgatattttacttaaaagtcgatacaaaccgtaacataaaca 432  Q
    ||||||||||  |||| || ||||||||| ||||||||||| ||||||    
T  50534405 atcgaatgatcatttatttgaaagtcgattcaaaccgtaacgtaaaca 50534452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 50538535 - 50538676
Alignment:
Q  297 tgtaaaaattgtatt-aatccgatcggattcaaactccattgaaaaaacaatctaatctcgaccaaattgcatgttattttatttttgaatcgaatgata 395  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || | | |  ||| | |||   | || ||||| |||||||| ||||    
T  50538535 tgtaaaaattgaatttaatccgatcggattcaaactccattgaaaaaacaatccaaacacaattaaaatacatccaaattaattttagaatcgaaagata 50538634  T
Q  396 ttttacttaaaagtcgatacaaaccgtaacataaacacctat 437  Q
    | |||||| ||||||||| |||||||||||| ||| ||||||    
T  50538635 tcttacttgaaagtcgattcaaaccgtaacacaaagacctat 50538676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 44902788 - 44902735
Alignment:
Q  367 atgttattttatttttgaatcgaatgatattttacttaaaagtcgatacaaacc 420  Q
    |||| |||||| ||||||||||||||||||||| ||| ||| ||||| ||||||    
T  44902788 atgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaacc 44902735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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