View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21616_low_8 (Length: 402)
Name: NF21616_low_8
Description: NF21616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21616_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 25452712 - 25452339
Alignment:
| Q |
16 |
actagaacttgccacatgccacttgggagaaattggcctaataccttttctcttctgggtacctaaaagtgctgatttttctgtacaagcatcttcttgg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25452712 |
actagaacttgccacatgccacttgggagaaattggcctaataccttttctcttctgcgtacctaaaagtgctgatttttctgtacaagcatcttcttgg |
25452613 |
T |
|
| Q |
116 |
tgtgaatggatggtatttggtatactgagtaaaatatgtcagttataccgccagtgaacactcccactgtgtcagtttttggtataaataccaaattttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25452612 |
tgtgaatggatggtatttggtatactgagtaaaatatgtcagttataccgccagtgaacactcccactgtgtcagtttttggtataaataccaaaaattt |
25452513 |
T |
|
| Q |
216 |
taactactatagttaatttaggttccatgcccaaaacatttttctgaaccagtcatttcatttcattcaccctacccccctaaaactatggtataaatac |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25452512 |
taactactatagttaatttaggttccatgcccaaaacatttttctcaaccagtcatttcatttcattcactctacccccctaaaactatggtataaatac |
25452413 |
T |
|
| Q |
316 |
attttcttggcaataaattgaagatgaataaagttttggattctttcaattctttattcaattatcattgagaa |
389 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25452412 |
attttcttggcaataagttgaagatgaataaagttttggattctttcaattctttattcaattatcatggagaa |
25452339 |
T |
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