View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21617_high_1 (Length: 556)
Name: NF21617_high_1
Description: NF21617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21617_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 264 - 550
Target Start/End: Complemental strand, 47180175 - 47179889
Alignment:
| Q |
264 |
gtcgagtctctattaaatcctacaaccacatcgtcatttaccaaaccatatttatgagataaaactttaaacaacaacttctatctatctattttcaacc |
363 |
Q |
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| T |
47180175 |
gtcgagtctctattaaatcctacaactacatcgccatttaccaaaccatatttatgagataaaactttaaacaacaacttctatctatctattttcaacc |
47180076 |
T |
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| Q |
364 |
tctaacaccatttcttgtttagtgtcatgttaaacacgtgcaaattacacacacatgacactcccttttcatgcttacaacacaccaaatatcgctctat |
463 |
Q |
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| T |
47180075 |
tctaacaccatttctcgtatagtgtcatgttaaacacgtgcaaattacacacacatgacactcccttttcatgcttacaacacaccaaatatcgctctat |
47179976 |
T |
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| Q |
464 |
ctaacgaaccttatgagtctcctcttgactacacccccgcccacacccacaaaacattaataaagagaatttcaattttagaataat |
550 |
Q |
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| T |
47179975 |
ctaacgaaccttatgagtctcctcctgactacacccccgcccacacccacaaaacattaataaagagaatttcaattttagaataat |
47179889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 47180384 - 47180162
Alignment:
| Q |
25 |
acatcaaccacaaaatgggtaggcatgatccaaatcaatgttagtaaaaacactactaaaaccatgttaaccaaaatgtctcccccacaccccccaaaac |
124 |
Q |
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| T |
47180384 |
acatcaaccacaaaatgggtaggcatgatccaaatcaatgttagtaaaaacactactaaaaccatgttaaccaaaatgtctcccccacaccccccaaaac |
47180285 |
T |
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| Q |
125 |
ttgaagatttataagaaaatatgctaaaaatattctttcaacacgcgacgacctacacaaaatcttgaatcacaatataaaatacaaatcttaaatatcc |
224 |
Q |
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| T |
47180284 |
ttgaagatttataagaaaatatgctaaaaatattctttcaacacgcgacgacctacacaaaatcttgaatcacaatataaaatacaaatcttaaatatcc |
47180185 |
T |
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| Q |
225 |
ttccaccaagtcgagtctctatt |
247 |
Q |
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| T |
47180184 |
ttccaccaagtcgagtctctatt |
47180162 |
T |
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