View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21617_low_2 (Length: 505)
Name: NF21617_low_2
Description: NF21617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21617_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 45129048 - 45129510
Alignment:
| Q |
19 |
atattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaac |
118 |
Q |
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| T |
45129048 |
atattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaac |
45129147 |
T |
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| Q |
119 |
agctagcaaattgtatggaatnnnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatc |
218 |
Q |
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| T |
45129148 |
agctagcaaattgtatggaataaaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatc |
45129247 |
T |
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| Q |
219 |
ataagctttgcaagttgaggaacataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaagg |
318 |
Q |
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| T |
45129248 |
ataagctttgcaagttgaggaacataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaagg |
45129347 |
T |
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| Q |
319 |
tgacaagtttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtc |
418 |
Q |
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| T |
45129348 |
tgacaagtttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtc |
45129447 |
T |
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| Q |
419 |
ccttgcttaacaattcaaaaaagcaccgtttcagattacaaaatatgtacagtacaataaaac |
481 |
Q |
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| T |
45129448 |
ccttgcttaacaattcaaaaaagcaccgtttcagattacaaaatatgtacagtacaataaaac |
45129510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 40280910 - 40280985
Alignment:
| Q |
26 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
101 |
Q |
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| T |
40280910 |
tccatgagaccagaagaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 421
Target Start/End: Original strand, 40281445 - 40281539
Alignment:
| Q |
327 |
ttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtccct |
421 |
Q |
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| T |
40281445 |
ttacctgcataactttctcctgtcaaaaacaaatctgtgtgtttgtattgggggaacttgttgaaccaatgtagcaagaacacaaggttgtccct |
40281539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
26 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
88 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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