View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21617_low_3 (Length: 486)
Name: NF21617_low_3
Description: NF21617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21617_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 49811160 - 49811444
Alignment:
| Q |
1 |
aagaggaatggaccaaggaaactaaaatctttgcctcttttaacagcccaaaatgtgtagactgttaagctagcaaccaccacacctgttagaaatgctg |
100 |
Q |
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| T |
49811160 |
aagaggaatggagcaaggaaactaaaatctttgcctcttttaacagcccaaaatgtgtagaatgttaagctagcaaccaccacacccgttagaaatgctg |
49811259 |
T |
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| Q |
101 |
cctctaggacgaccggtgctgtacattgacacaactcacatgttagtattgttgtccccctcac-nnnnnnnnnnnnnnnnncatagtatgtcagttgtt |
199 |
Q |
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| T |
49811260 |
cctctaggacgaccggtgctgtacattgacacaactcacatgttagtattgttgtccccctcacaaaaaaaaataaaaaaaacatagtatggcagttgtt |
49811359 |
T |
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| Q |
200 |
tttaaaagacaaagtatatttatagaacaagatgatgaatgctcattgaatgacttttacatcgtctgcatatccattatactcc |
284 |
Q |
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| T |
49811360 |
tttaaaagacaaagtatatttatagaacaagatgatgaatgctcattgaatgacttttacatcttctgcatatccattatactcc |
49811444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 276 - 466
Target Start/End: Original strand, 49811628 - 49811814
Alignment:
| Q |
276 |
ttatactccacattcgaaaatatgttttgtgtttgagaataaaatttgcggtctttactttacaaaccaatatgtgttctcgataatatttttaaatttc |
375 |
Q |
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| T |
49811628 |
ttatactccacattcaaaaatatgttttgcgtttgagaataaaatttgcggtctttactttacaaaccaatatgtgttctcgataatatttttaaatttc |
49811727 |
T |
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| Q |
376 |
aaaccataaatgaatgacttgttcaaaaaagcataagtgaatgatgtttaatatctatctattactacattttcatattttgtttttcata |
466 |
Q |
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| T |
49811728 |
aaaccataaatgaatgacttgttcaaaaaagcataagtggatgatgtttaa----tatctattactacattttcatattttgtttttcata |
49811814 |
T |
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