View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21617_low_4 (Length: 453)

Name: NF21617_low_4
Description: NF21617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21617_low_4
NF21617_low_4
[»] chr5 (9 HSPs)
chr5 (1-437)||(31279624-31280060)
chr5 (69-146)||(36290602-36290679)
chr5 (69-146)||(41660106-41660183)
chr5 (82-146)||(43222126-43222190)
chr5 (73-143)||(4895737-4895807)
chr5 (73-143)||(35660611-35660681)
chr5 (73-143)||(37266734-37266804)
chr5 (69-142)||(29340999-29341072)
chr5 (70-146)||(2984389-2984465)
[»] chr6 (4 HSPs)
chr6 (69-146)||(24484879-24484956)
chr6 (68-146)||(2800608-2800686)
chr6 (69-146)||(2142291-2142368)
chr6 (67-143)||(4804451-4804527)
[»] chr8 (4 HSPs)
chr8 (69-146)||(26749546-26749623)
chr8 (70-146)||(34612564-34612640)
chr8 (73-143)||(30426671-30426741)
chr8 (94-146)||(30796278-30796329)
[»] chr7 (8 HSPs)
chr7 (69-146)||(47799898-47799975)
chr7 (69-147)||(989128-989206)
chr7 (69-146)||(8149609-8149686)
chr7 (73-143)||(21151155-21151225)
chr7 (73-143)||(25084730-25084800)
chr7 (69-146)||(30588535-30588612)
chr7 (67-138)||(19027679-19027751)
chr7 (67-138)||(20726885-20726957)
[»] chr4 (11 HSPs)
chr4 (69-146)||(5524447-5524524)
chr4 (69-146)||(56269074-56269151)
chr4 (69-146)||(56453818-56453895)
chr4 (73-143)||(56558282-56558352)
chr4 (69-146)||(1015852-1015929)
chr4 (69-146)||(36688186-36688263)
chr4 (69-146)||(42010117-42010194)
chr4 (73-143)||(19901920-19901990)
chr4 (68-146)||(36532626-36532703)
chr4 (69-146)||(37002249-37002326)
chr4 (67-143)||(5763158-5763234)
[»] chr3 (5 HSPs)
chr3 (69-146)||(31523666-31523743)
chr3 (69-146)||(49679268-49679345)
chr3 (69-146)||(42613080-42613157)
chr3 (73-143)||(43719949-43720019)
chr3 (83-143)||(19830443-19830503)
[»] chr2 (3 HSPs)
chr2 (69-146)||(374993-375070)
chr2 (69-146)||(23459844-23459921)
chr2 (69-146)||(8988855-8988932)
[»] chr1 (5 HSPs)
chr1 (69-146)||(52280037-52280114)
chr1 (68-146)||(39426210-39426288)
chr1 (69-146)||(30077642-30077719)
chr1 (82-146)||(24413293-24413357)
chr1 (82-146)||(32887791-32887855)
[»] scaffold0171 (1 HSPs)
scaffold0171 (76-146)||(17311-17381)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 31280060 - 31279624
Alignment:
Q  1 gcatatattatgcattgtccttacaaatacaagagacatggtgtacttatttgttacaagcgagggtacaa-tttggagagtgatagacacatcaaataa 99  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || ||| ||||||||||| ||||||||| ||||||    
T  31280060 gcatatattatgcattgtccttacaaatacaagagacatattgtacttatttgttacaagcgagagtgcaaatttggagagtgctagacacataaaataa 31279961  T
Q  100 atggagggtcttatcattaagtcggtcccaccataattaattattttagannnnnnnncaaaataatattaattgaatatctactttgtttgactatttg 199  Q
    || | ||||| |||||||| || ||||| ||||||||||||||||||| |        ||||||||||||||||||||||||| ||||||||||||||||    
T  31279960 attgtgggtcctatcattatgtgggtcctaccataattaattattttatatttttat-caaaataatattaattgaatatctattttgtttgactatttg 31279862  T
Q  200 taatagagggagggtgtggagagaattgatggaaaatttttctcacgaaaatatatctaaattattagagctgatgatatgataaacacgtttagtccat 299  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279861 taatagagtgagggtgtggagagaattgatggacaatttttctcacgaaaatatatctaaattattagagctgatgatatgataaacacgtttagtccat 31279762  T
Q  300 tgccacgaaattcctgcagcaataatttctcatacccaaggtcaaaaatggttgctcttttttctcacccgtctgtgaaattaatttatagttttttaca 399  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31279761 tgccacgaaattcctgcagcaataacttctcatacccaaggtcaaaaatggttgctcttatttctcacccgtctgtgaaattaatttatagttttttaca 31279662  T
Q  400 cattgagacaacatgacgaatattctaatccaaatatg 437  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31279661 cattgagacaacatgacgaatattctaatccaaatatg 31279624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 36290679 - 36290602
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||||| ||||| | ||||||||| ||||||||||||    
T  36290679 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttt 36290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 41660183 - 41660106
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| |||||| |||| || || ||||||||||| ||||||||||||    
T  41660183 caatttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattatttt 41660106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 43222190 - 43222126
Alignment:
Q  82 gatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||  ||||| |||| ||||||||||||||| | | ||||||||| ||||||||||||    
T  43222190 gatagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaattatttt 43222126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 4895737 - 4895807
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  4895737 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4895807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 35660611 - 35660681
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  35660611 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 35660681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 37266804 - 37266734
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  37266804 ttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattat 37266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 29341072 - 29340999
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaatta 142  Q
    |||||||||||| ||||||||||  ||||| || | ||||| ||  ||||||| ||||||||||| ||||||||    
T  29341072 caatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 2984389 - 2984465
Alignment:
Q  70 aatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||| ||||||||||| |||||| ||  |  || ||||| ||| | ||||||||||| ||||||||||||    
T  2984389 aatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaattatttt 2984465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 24484956 - 24484879
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  24484956 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttt 24484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 2800608 - 2800686
Alignment:
Q  68 acaatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||||| ||||||||||| ||||| || | || || || |||||||| ||||||||||| ||| ||||||||    
T  2800608 acaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatttt 2800686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 2142291 - 2142368
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| |||||  ||||||| || ||| ||||||| ||||||||||||    
T  2142291 caatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaattatttt 2142368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 4804527 - 4804451
Alignment:
Q  67 tacaatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    ||||| |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  4804527 tacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4804451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 26749546 - 26749623
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||  ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 34612640 - 34612564
Alignment:
Q  70 aatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||| ||||| ||||||||||  |||||| ||| ||||| ||||| ||||| |||| |||||| ||||||||||||    
T  34612640 aatttagagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatttt 34612564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 30426671 - 30426741
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  30426671 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 30426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 30796329 - 30796278
Alignment:
Q  94 aaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||    
T  30796329 aaataaatggcgggtct-atcactaagtgggtcccaccatcattaattatttt 30796278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 47799898 - 47799975
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||  ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 989206 - 989128
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttta 147  Q
    |||||||||||| ||||||||||  ||||| || | ||||| || || ||||| ||||| |||||||||||||||||||    
T  989206 caatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattatttta 989128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8149686 - 8149609
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||| |||| |||||| || | |||||| | | ||||| ||||||||||| ||||||||||| ||||||||||||    
T  8149686 caatttgaagagagatagagacgtaaaataagtagtgggtcatatcattaagtgggtcccaccatcattaattatttt 8149609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 21151225 - 21151155
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| ||||||| || || || ||||| ||||||||||| |||||||||    
T  21151225 ttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattat 21151155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 25084730 - 25084800
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 25084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 30588612 - 30588535
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||  || ||||||||||  |||||| ||  ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  30588612 caatttgggaagagatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccatcattaattatttt 30588535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 19027679 - 19027751
Alignment:
Q  67 tacaatttggagagtgatagacac-atcaaataaatggagggtcttatcattaagtcggtcccaccataatta 138  Q
    |||||||||||||| ||||||||| |  |||||||||| ||||| ||||| ||||| | ||||||||| ||||    
T  19027679 tacaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 19027751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 20726957 - 20726885
Alignment:
Q  67 tacaatttggagagtgatagacac-atcaaataaatggagggtcttatcattaagtcggtcccaccataatta 138  Q
    |||||||||||||| ||||||||| |  |||||||||| ||||| ||||| ||||| | ||||||||| ||||    
T  20726957 tacaatttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 20726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 5524524 - 5524447
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| |||||||| |  |||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  5524524 caatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattatttt 5524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 56269074 - 56269151
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| || || ||||| ||||||||||| ||||||||||||    
T  56269074 caatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttt 56269151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 56453818 - 56453895
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||  ||| ||||| ||||||||||| ||||||||||| ||| ||||||||    
T  56453818 caatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttt 56453895  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 56558352 - 56558282
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| ||||| ||||| ||||||||||| |||||||||    
T  56558352 ttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattat 56558282  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 1015852 - 1015929
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||| ||||| ||||||||||  |||||| ||| |||||  ||||||| || ||||||||||| ||||||||||||    
T  1015852 caatttagagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaattatttt 1015929  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 36688186 - 36688263
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||  | ||| ||||| ||||| ||||||||||| ||||||||||||    
T  36688186 caatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaattatttt 36688263  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 42010194 - 42010117
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| |||||| |||  |||||| ||| ||||| ||||| ||| | ||||||||||| ||||||||||||    
T  42010194 caatttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 42010117  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 19901920 - 19901990
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  19901920 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 19901990  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 36532703 - 36532626
Alignment:
Q  68 acaatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||| ||||| ||||||||||| |||||||| | || || ||||||| ||| ||| ||||||| ||||||||||||    
T  36532703 acaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggttccaccat-attaattatttt 36532626  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 37002249 - 37002326
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||| || ||||||||||  |||||| ||| || || ||| | ||||| ||||||||||| ||||||||||||    
T  37002249 caatttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatttt 37002326  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 5763158 - 5763234
Alignment:
Q  67 tacaatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    ||||| |||||||| |||||| |||  ||||| |||| ||||| || || ||||| ||||||||||| |||||||||    
T  5763158 tacaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 5763234  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 31523666 - 31523743
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||| | ||||| ||||||||||| ||||||||||||    
T  31523666 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 31523743  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 49679268 - 49679345
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||||| ||| | ||||||||||| ||||||||||||    
T  49679268 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 49679345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 42613157 - 42613080
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||| |||| |||||||| |  |||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  42613157 caatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttt 42613080  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 43719949 - 43720019
Alignment:
Q  73 ttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||| ||||||||||  |||||||| | ||||| || || ||||| ||||||||||| |||||||||    
T  43719949 ttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccatcattaattat 43720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 19830443 - 19830503
Alignment:
Q  83 atagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattat 143  Q
    |||||||||  ||||| |||| ||||| || |||||||| ||||||||||| |||||||||    
T  19830443 atagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattat 19830503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 375070 - 374993
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||| | ||||| ||||||||||| ||||||||||||    
T  375070 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 23459844 - 23459921
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||| ||||| ||| | ||||||||||| ||||||||||||    
T  23459844 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 23459921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8988932 - 8988855
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||   |||| ||||| ||||| ||||||||||| ||||||||||||    
T  8988932 caatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaattatttt 8988855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 52280037 - 52280114
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| |||||||| |  |||||| ||| ||||| ||||| ||||| | ||||||||| ||||||||||||    
T  52280037 caatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttt 52280114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 39426288 - 39426210
Alignment:
Q  68 acaatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||||| ||||||||||| ||||| || | ||||| || || ||| | |||||||| || ||||||||||||    
T  39426288 acaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttt 39426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 30077642 - 30077719
Alignment:
Q  69 caatttggagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    |||||||||||| ||||||||||  |||||| ||| ||||  ||||| |||||  ||||||| || ||||||||||||    
T  30077642 caatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattatttt 30077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 24413293 - 24413357
Alignment:
Q  82 gatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||  ||||  |||| ||||| ||||||||| | ||||||||||| ||||||||||||    
T  24413293 gatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattatttt 24413357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 32887791 - 32887855
Alignment:
Q  82 gatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||||||||| |||||||| | || || || |||||| | ||||||||||| ||||||||||||    
T  32887791 gatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattatttt 32887855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 17311 - 17381
Alignment:
Q  76 gagagtgatagacacatcaaataaatggagggtcttatcattaagtcggtcccaccataattaattatttt 146  Q
    ||||| ||||||||||  |||||| ||  ||||| ||||| ||||| ||||||||||| ||||||||||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattatttt 17381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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