View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21617_low_6 (Length: 273)
Name: NF21617_low_6
Description: NF21617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21617_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 4491453 - 4491703
Alignment:
| Q |
8 |
attattctccactcgccaaaaccgcttatcttcagtaactgaggatgaagtggagtatttagaattctggtcacatcatctggactaaagacagtagaga |
107 |
Q |
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| T |
4491453 |
attattctccactcgccaaaaccgcttatcttcggtaactgaggatgaagtggagtatttagaattctggtcacatcatccggactaaagacagtagaga |
4491552 |
T |
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| Q |
108 |
ttgggggaacatatatcataaactagaagattcaatcataacatacaaagtatatagggcgactaatcaagccttaggaaaattataaaaagcttcaaat |
207 |
Q |
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| T |
4491553 |
ttgggggaacatatatcataaactagaagattcaatcataacatacaaagtatatagggcgactaatcaagccttaggaaaattataaaaagcttcaaat |
4491652 |
T |
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| Q |
208 |
ggtatttataactttatgaaatgaatattgaaacaatgcatactgaaaaat |
258 |
Q |
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| T |
4491653 |
ggtatttataactttatgaaatgaatattgaaacaatgcatactgaaaaat |
4491703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 4505465 - 4505682
Alignment:
| Q |
8 |
attattctccactcgccaaaaccgcttatcttcagtaactgaggatgaagtggagtatttagaattctggtcacatcatctggactaaagacagtagaga |
107 |
Q |
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||||||| |||| |||||||||||||||||||| |||||||||||| | ||| |||||| |||||||| ||||||| ||| |||| ||| |||||||||| |
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| T |
4505465 |
attattcgccacacgccaaaaccgcttatcttcggtaactgaggataacgtg-agtattaagaattctagtcacattatccggacaaaaaacagtagaga |
4505563 |
T |
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| Q |
108 |
ttgggggaacatatatcataaactagaagattcaatcataacatacaaagtatatagggcgactaatcaagccttaggaaaattataaaaagcttcaaat |
207 |
Q |
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| T |
4505564 |
ttttggtaacatatagcaagaactagaagatccaaccataacatagctagaatatagagacactaatcaagccttaggaaaattctaaaaagcttcacat |
4505663 |
T |
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| Q |
208 |
ggtatttataactttatga |
226 |
Q |
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||| || ||| |||||||| |
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| T |
4505664 |
ggttttaatatctttatga |
4505682 |
T |
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