View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21618_low_1 (Length: 861)

Name: NF21618_low_1
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21618_low_1
NF21618_low_1
[»] chr5 (6 HSPs)
chr5 (16-570)||(28532481-28533029)
chr5 (568-686)||(28533069-28533187)
chr5 (106-161)||(29021558-29021613)
chr5 (109-162)||(28673512-28673565)
chr5 (356-401)||(41900503-41900548)
chr5 (19-64)||(41900804-41900849)
[»] chr6 (14 HSPs)
chr6 (25-217)||(6588466-6588655)
chr6 (104-215)||(6416827-6416938)
chr6 (570-644)||(6587982-6588056)
chr6 (354-412)||(6593929-6593987)
chr6 (442-539)||(6588144-6588241)
chr6 (356-412)||(6423907-6423963)
chr6 (358-411)||(6410699-6410752)
chr6 (654-700)||(14810035-14810081)
chr6 (358-412)||(19633104-19633158)
chr6 (354-411)||(6417092-6417149)
chr6 (355-404)||(6596241-6596290)
chr6 (372-413)||(7132323-7132364)
chr6 (372-413)||(7135246-7135287)
chr6 (372-413)||(7138169-7138210)
[»] chr3 (7 HSPs)
chr3 (104-215)||(13469859-13469970)
chr3 (576-686)||(51763081-51763191)
chr3 (354-412)||(51763388-51763446)
chr3 (104-226)||(51763574-51763696)
chr3 (32-65)||(514011-514044)
chr3 (355-412)||(51113195-51113252)
chr3 (109-154)||(513925-513970)
[»] chr1 (4 HSPs)
chr1 (115-226)||(19467621-19467732)
chr1 (354-418)||(7555198-7555262)
chr1 (25-65)||(19467779-19467819)
chr1 (356-413)||(19467428-19467485)
[»] chr4 (11 HSPs)
chr4 (115-215)||(21833493-21833593)
chr4 (354-413)||(553759-553818)
chr4 (653-700)||(1537252-1537299)
chr4 (25-64)||(1601186-1601225)
chr4 (354-409)||(21833278-21833333)
chr4 (607-704)||(53759964-53760058)
chr4 (22-65)||(53761152-53761195)
chr4 (648-700)||(1547374-1547426)
chr4 (32-66)||(21833639-21833673)
chr4 (104-202)||(53761012-53761110)
chr4 (295-332)||(7225253-7225290)
[»] chr7 (7 HSPs)
chr7 (115-209)||(10615459-10615553)
chr7 (354-413)||(10615713-10615772)
chr7 (651-700)||(15091285-15091334)
chr7 (353-413)||(10169047-10169107)
chr7 (294-338)||(10169137-10169181)
chr7 (353-413)||(10176572-10176632)
chr7 (294-338)||(10176662-10176706)
[»] chr8 (2 HSPs)
chr8 (355-399)||(32151969-32152013)
chr8 (109-162)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 28532481 - 28533029
Alignment:
Q  16 gataatgagaaagacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttgga 115  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532481 gataacgagaaagacatcaatgtcggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttgga 28532580  T
Q  116 gaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28532581 gaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagc 28532680  T
Q  216 ctctatcccattgttataactacgagtccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcttcgagcaaa 315  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      |||||||||    
T  28532681 ctctaccccattgttataactacgagttcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaa 28532774  T
Q  316 gggaaacattctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532775 gggaaacattctgcgataagaaataggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctg 28532874  T
Q  416 ggaagcggttaccaacgtttgggagtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagata 515  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||||| ||| |||||    
T  28532875 ggaagcggttaccaacgtttggaagtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagata 28532974  T
Q  516 gcgagagagattgagggaattgagatgggtgaaccttttgaagaggctacgtagg 570  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  28532975 gcgagagagatcgaggaaattgagatgggtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 568 - 686
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  568 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 667  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  668 tgaatatacattcccaaca 686  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  106 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 161  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  109 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 162  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  356 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 401  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 41900849 - 41900804
Alignment:
Q  19 aatgagaaagacatcaatgttggtctctcacggagagcagaagcaa 64  Q
    ||||| |||||| |||||||||||||||  ||||||||||||||||    
T  41900849 aatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 6588655 - 6588466
Alignment:
Q  25 aaagacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttac 124  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||    
T  6588655 aaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttac 6588559  T
Q  125 agttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 217  Q
    | ||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588558 aattgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  104 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 203  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  204 aagtgagagagc 215  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 570 - 644
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  570 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 644  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 412  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 442 - 539
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  442 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 539  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  356 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 412  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  358 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 411  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 654 - 700
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  654 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 700  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  358 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 412  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 411  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  355 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 404  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  372 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  372 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  372 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  104 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 203  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  204 aagtgagagagc 215  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 686
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  576 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 675  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  676 cattcccaaca 686  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 412  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  104 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 203  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  204 aagtgagagagcctctatcccat 226  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  32 tcaatgttggtctctcacggagagcagaagcaat 65  Q
    ||||||||||||||||||||||||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  355 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 412  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  109 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 154  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  115 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 214  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  215 cctctatcccat 226  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 418  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 19467819 - 19467779
Alignment:
Q  25 aaagacatcaatgttggtctctcacggagagcagaagcaat 65  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  19467819 aaagacctcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 413
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  356 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  115 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 214  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  215 c 215  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 653 - 700
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  653 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 700  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 1601186 - 1601225
Alignment:
Q  25 aaagacatcaatgttggtctctcacggagagcagaagcaa 64  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1601186 aaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 409  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 607 - 704
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  607 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 704  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 53761195 - 53761152
Alignment:
Q  22 gagaaagacatcaatgttggtctctcacggagagcagaagcaat 65  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  53761195 gagaaagacgtcaatgttggtctttcacggagagcagaagcaat 53761152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 700
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  648 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 700  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 21833673 - 21833639
Alignment:
Q  32 tcaatgttggtctctcacggagagcagaagcaatg 66  Q
    ||||||||||||||||||||||||| |||||||||    
T  21833673 tcaatgttggtctctcacggagagctgaagcaatg 21833639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  104 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 202  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 7225290 - 7225253
Alignment:
Q  295 aggtcgagttcttcgagcaaagggaaacattctgcgat 332  Q
    ||||||||||||||||||||||||||||| || |||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgat 7225253  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  115 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 209  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  354 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 700
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  651 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 700  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  353 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 10169181 - 10169137
Alignment:
Q  294 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 338  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  353 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 413  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 10176706 - 10176662
Alignment:
Q  294 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 338  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  355 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 399  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  109 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 162  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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