View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21618_low_10 (Length: 256)
Name: NF21618_low_10
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_10 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 10784305 - 10784540
Alignment:
| Q |
18 |
agctcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaaaatgtatttt---ttaaaaggaattatcatttatttaaac |
114 |
Q |
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| T |
10784305 |
agctcaatattaaaaattggagatcccgctcaaatattatatacggactcctgatataaaaatgtatttttttttaaaaggaattatcatttatttaaac |
10784404 |
T |
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| Q |
115 |
ttcaaataacataaaattaaggttaggcaaacaatagtcatctttataaac-------taagtaaaaagtaagtttgtatgggagtaactaactaatttt |
207 |
Q |
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| T |
10784405 |
tgcaaataacataaaatcaaggttaggcttacaatagtcatctttataaactaagtaataagtaaaaagtaagtttgtatgggagtaactaactagtttt |
10784504 |
T |
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| Q |
208 |
tgttgagcttcattaaccacaataagtattctgatg |
243 |
Q |
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| T |
10784505 |
tgttgagcttcattaaccactataattgttctgatg |
10784540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 50507176 - 50506951
Alignment:
| Q |
21 |
tcaatattaaaaattggagatcccgctcaaatattaaatacggactcctgatataaaaa-tgtattttttaaaaggaattatcatttatttaaacttcaa |
119 |
Q |
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| T |
50507176 |
tcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaataaaaaaaatgtattttttaaaagaaaatatcatttatttaaaccgtaa |
50507077 |
T |
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| Q |
120 |
ataacataaaattaaggttaggcaaacaatagtcatctttataaactaagtaaa---aagtaagtttgtatgggagtaactaactaatttttgttgagct |
216 |
Q |
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| T |
50507076 |
ataacataaacttaaggctaggctaacaatagtcatctttataaactaagtaaaagtaagtaa-tttgtacgggagtaactaactaatttttgttgagtt |
50506978 |
T |
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| Q |
217 |
tcattaaccacaataagtattctgatg |
243 |
Q |
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| T |
50506977 |
ccattaaccactataattgttctgatg |
50506951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 12704673 - 12704733
Alignment:
| Q |
158 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaatttttgttgagcttca |
219 |
Q |
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| T |
12704673 |
ttataaattaagtaaaa-gtaagtttgtatggtaggaactaactaacttgtgttgagtttca |
12704733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 9206961 - 9206911
Alignment:
| Q |
177 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaaccac |
227 |
Q |
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| T |
9206961 |
taagtttgtatgggaggaactaactaacttgtgttgaacttcactaaccac |
9206911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 56220874 - 56220830
Alignment:
| Q |
158 |
ttataaactaagtaaaaagtaagtttgtatgggagtaactaactaa |
203 |
Q |
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| T |
56220874 |
ttataaattaagtaaaaa-taagtttgtatgggaggaactaactaa |
56220830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 8509446 - 8509495
Alignment:
| Q |
177 |
taagtttgtatgggagtaactaactaatttttgttgagcttcattaacca |
226 |
Q |
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| T |
8509446 |
taagtttgtatgggagaaactaactaacctgtgttgagcttcactaacca |
8509495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 44891 - 44927
Alignment:
| Q |
167 |
aagtaaaaagtaagtttgtatgggagtaactaactaa |
203 |
Q |
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| T |
44891 |
aagtaaaaagtaagtttgtatgggaagaactaactaa |
44927 |
T |
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